RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 PIGTQ969N2 578 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 SLC35B4Q969S0 331 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 ZHX1-C8orf76Q96EF9 292 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 CPPED1Q9BRF8 314 aaPredicted RBP6.9□□□□□ -1.3
CDH3-209ENST00000569080 PTDSS2Q9BVG9 487 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 SPATA9Q9BWV2 254 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 GSX2Q9BZM3 304 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 AMBRA1Q9C0C7 1298 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 GSX1Q9H4S2 264 aaPredicted RBP6.9□□□□□ -1.3
CDH3-209ENST00000569080 ZNF701Q9NV72 531 aaPredicted RBP6.9□□□□□ -1.3
CDH3-209ENST00000569080 INTS9Q9NV88 658 aaKnown RBP6.9□□□□□ -1.3
CDH3-209ENST00000569080 THUMPD1Q9NXG2 353 aaKnown RBP6.9□□□□□ -1.3
CDH3-209ENST00000569080 EMC3Q9P0I2 261 aa6.9□□□□□ -1.3
CDH3-209ENST00000569080 FN1P02751 2386 aaKnown RBP6.9□□□□□ -1.31
CDH3-209ENST00000569080 TLN2Q9Y4G6 2542 aa6.9□□□□□ -1.31
CDH3-209ENST00000569080 DPRXA6NFQ7 191 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 OR5H1A6NKK0 313 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 AQP7P3A6NL99 342 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 FTCDNL1E5RQL4 147 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 EIF1BO60739 113 aaKnown RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 EDF1O60869 148 aaKnown RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 SMPD2O60906 423 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 IGHV3-9P01782 118 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 SOD3P08294 240 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 DANCRP0C864 163 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 UQCRBP14927 111 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 ETS2P15036 469 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 GPX2P18283 190 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 HTR2AP28223 471 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 PRKAR1BP31321 381 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 IDUAP35475 653 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 PTH2RP49190 550 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 OR2B6P58173 313 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 SLC35A1P78382 337 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 IRX1P78414 480 aaPredicted RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 SLC25A3Q00325 362 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 HOXC5Q00444 222 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 EGR4Q05215 589 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 BSPH1Q075Z2 132 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 BNIP2Q12982 314 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 CAPRIN1Q14444 709 aaKnown RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 LARS2Q15031 903 aaKnown RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 ZSWIM7Q19AV6 140 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 TIMM23BQ5SRD1 257 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 GCNT6Q5T4J0 391 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 SHEQ5VZ18 495 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 WBP2NLQ6ICG8 309 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 PRSS57Q6UWY2 283 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 HDXQ7Z353 690 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 RETREG3Q86VR2 466 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 CIARTQ8N365 385 aaPredicted RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 KBTBD8Q8NFY9 601 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 NFKBIDQ8NI38 313 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 HSD17B8Q92506 261 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 AKAP1Q92667 903 aaKnown RBP eCLIP6.89□□□□□ -1.31
CDH3-209ENST00000569080 NEUROG1Q92886 237 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 TMEM45BQ96B21 275 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 APH1AQ96BI3 265 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 DDIT4LQ96D03 193 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 PERPQ96FX8 193 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 POM121Q96HA1 1249 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 COX4I2Q96KJ9 171 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 MAGEB18Q96M61 343 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 SMR3AQ99954 134 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 USB1Q9BQ65 265 aaKnown RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 TRIM2Q9C040 744 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 TMEM38AQ9H6F2 299 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 PRDM4Q9UKN5 801 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 SLC9A8Q9Y2E8 581 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 NOSIPQ9Y314 301 aaKnown RBP6.89□□□□□ -1.31
CDH3-209ENST00000569080 RNF115Q9Y4L5 304 aa6.89□□□□□ -1.31
CDH3-209ENST00000569080 IGKV1D-42A0A075B6H8 117 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 A0A1W2PP18 115 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 A8MVM7 634 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 SHISA9B4DS77 424 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 OVOL3O00110 214 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 GPR171O14626 319 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 TPST1O60507 370 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 TMCC2O75069 709 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 RAD51DO75771 328 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 AKR7A3O95154 331 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 GPIP06744 558 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 HOXB4P17483 251 aaPredicted RBP6.88□□□□□ -1.31
CDH3-209ENST00000569080 GGT1P19440 569 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 PCBP3P57721 371 aaKnown RBP6.88□□□□□ -1.31
CDH3-209ENST00000569080 CDK6Q00534 326 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 SPOCK1Q08629 439 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 CEACAM7Q14002 265 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 SELPLGQ14242 412 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 PPA1Q15181 289 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 OR7A5Q15622 319 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 STK11Q15831 433 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 GABRA6Q16445 453 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 PGGHGQ32M88 737 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 ZNF672Q499Z4 452 aaPredicted RBP6.88□□□□□ -1.31
CDH3-209ENST00000569080 GLIPR1L2Q4G1C9 344 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 AGKQ53H12 422 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 ZNF311Q5JNZ3 666 aa6.88□□□□□ -1.31
CDH3-209ENST00000569080 OTUD3Q5T2D3 398 aaPredicted RBP6.88□□□□□ -1.31
CDH3-209ENST00000569080 TSPO2Q5TGU0 170 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms