RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 MMP11P24347 488 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 NTSP30990 170 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 DIO3P55073 304 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 ISXQ2M1V0 245 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 TRIM16LQ309B1 348 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 SLC25A52Q3SY17 297 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 CFAP221Q4G0U5 840 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 PRR30Q53SZ7 412 aaPredicted RBP3.41□□□□□ -1.86
LINC00560-201ENST00000564593 PMF1Q6P1K2 205 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 VSTM4Q8IW00 320 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 NRMQ8IXM6 262 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 PAQR8Q8TEZ7 354 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 PIGCQ92535 297 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 FRAT1Q92837 279 aaPredicted RBP3.41□□□□□ -1.86
LINC00560-201ENST00000564593 FAM122AQ96E09 287 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 SLC35A5Q9BS91 424 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 CNPY3Q9BT09 278 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 SRXN1Q9BYN0 137 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 VCX2Q9H322 139 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 PTGES2Q9H7Z7 377 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 ISG20L2Q9H9L3 353 aaKnown RBP3.41□□□□□ -1.86
LINC00560-201ENST00000564593 UFSP2Q9NUQ7 469 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 ONECUT1Q9UBC0 465 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 TP53TG3Q9ULZ0 132 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 UBQLN1Q9UMX0 589 aaKnown RBP3.41□□□□□ -1.86
LINC00560-201ENST00000564593 AK6Q9Y3D8 172 aaKnown RBP3.41□□□□□ -1.86
LINC00560-201ENST00000564593 SLCO1B1Q9Y6L6 691 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 KIF24Q5T7B8 1368 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 NLRP1Q9C000 1473 aa3.41□□□□□ -1.86
LINC00560-201ENST00000564593 RIMS2Q9UQ26 1411 aa3.4□□□□□ -1.86
LINC00560-201ENST00000564593 USP54Q70EL1 1684 aa3.4□□□□□ -1.86
LINC00560-201ENST00000564593 A2ML1A8K2U0 1454 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NOTCH3Q9UM47 2321 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 PNPLA6Q8IY17 1366 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 TUBAL3A6NHL2 446 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 EPOPA6NHQ4 379 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM110-MUSTN1A8MSY1 372 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 HAT1O14929 419 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 LALBAP00709 142 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 SEMG1P04279 462 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 HSPB1P04792 205 aaKnown RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 ZBTB25P24278 435 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 FGF9P31371 208 aaPredicted RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 YWHABP31946 246 aaKnown RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 CHRNB3Q05901 458 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 IL24Q13007 206 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 CHIT1Q13231 466 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 PDK3Q15120 406 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 C9orf129Q5T035 196 aaKnown RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 TPGS2Q68CL5 300 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 TMEM110Q86TL2 294 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF584Q8IVC4 421 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 CCDC50Q8IVM0 306 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 SKA3Q8IX90 412 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 FBXL16Q8N461 479 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 C11orf42Q8N5U0 333 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 OR4D9Q8NGE8 314 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NEIL2Q969S2 332 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 CNOT6LQ96LI5 555 aaKnown RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 IL4I1Q96RQ9 567 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 MYCBPQ99417 103 aaPredicted RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 ZNF184Q99676 751 aaPredicted RBP3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NIPSNAP3BQ9BS92 247 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NMUR2Q9GZQ4 415 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NT5C3AQ9H0P0 336 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 EHD1Q9H4M9 534 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 APMAPQ9HDC9 416 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NUDT15Q9NV35 164 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 PRR34Q9NV39 138 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 B4GALT7Q9UBV7 327 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 ERVW-1Q9UQF0 538 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 MEMO1Q9Y316 297 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 NRXN3Q9Y4C0 1643 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 YEATS2Q9ULM3 1422 aa3.4□□□□□ -1.87
LINC00560-201ENST00000564593 CHD4Q14839 1912 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 AK9Q5TCS8 1911 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 TNRQ92752 1358 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 IGHV7-81A0A0B4J1V7 117 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 CLRN2A0PK11 232 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 VSTM2BA6NLU5 285 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 ZFP92A6NM28 416 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 E7ENQ6 273 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 ECI2O75521 394 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 SCGNO76038 276 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 SLITRK3O94933 977 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 HSMCR30P0CW71 290 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 IMPDH1P20839 514 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 TDO2P48775 406 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 RIPK4P57078 832 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 UBE2HP62256 183 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 KYAT1Q16773 422 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 EXOC3L2Q2M3D2 409 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 BEND3Q5T5X7 828 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 FHL5Q5TD97 284 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 RSBN1Q5VWQ0 802 aaPredicted RBP3.39□□□□□ -1.87
LINC00560-201ENST00000564593 HSD17B13Q7Z5P4 300 aaPredicted RBP3.39□□□□□ -1.87
LINC00560-201ENST00000564593 LCA5Q86VQ0 697 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 ANKRD49Q8WVL7 239 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 MAIP1Q8WWC4 291 aa3.39□□□□□ -1.87
LINC00560-201ENST00000564593 MRPS31Q92665 395 aaKnown RBP3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms