RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 YLPM1P49750 1951 aaKnown RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 PTPRMP28827 1452 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 GRIN2AQ12879 1464 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 MAP3K1Q13233 1512 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 FAM135AQ9P2D6 1515 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 INO80Q9ULG1 1556 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 NPIPA5A0A0B4J1W7 369 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 GAGE10A6NGK3 116 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 DISC1C4P0D8 188 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 C9J4A7 227 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 NPIPA5E9PKD4 350 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 NPIPA3F8WFD2 350 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TMX2-CTNND1H3BSU7 103 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PDXKO00764 312 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 RAB29O14966 203 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SIGLEC5O15389 551 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 CHST10O43529 356 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ITM2AO43736 263 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 KLRC4O43908 158 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 OR10H2O60403 315 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SCO1O75880 301 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 CELF2O95319 508 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 NTN1O95631 604 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TRAPPC2P0DI81 140 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TRAPPC2BP0DI82 140 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 KRTAP5-9P26371 169 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 HTR2AP28223 471 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SLC6A6P31641 620 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 S100A11P31949 105 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 KDELR2P33947 212 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TIMP3P35625 211 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PSMD8P48556 350 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PRELPP51888 382 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 FOXG1P55316 489 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 OR4D2P58180 307 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PTENP60484 403 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 NCALDP61601 193 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PKIAP61925 76 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 RPS6P62753 249 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 IRX4P78413 519 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 EFNB1P98172 346 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 DHODHQ02127 395 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PAX5Q02548 391 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 BTN1A1Q13410 526 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 KCNJ11Q14654 390 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ATP6V1FQ16864 119 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ZNF630Q2M218 657 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 KIF19Q2TAC6 998 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 SLC36A2Q495M3 483 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PABPC1L2AQ5JQF8 200 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ZNF569Q5MCW4 686 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 LRRC8EQ6NSJ5 796 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 RHBDD2Q6NTF9 364 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 H3F3CQ6NXT2 135 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 DENND1BQ6P3S1 775 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PLET1Q6UQ28 207 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 RBMS3Q6XE24 437 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 ACOT7LQ6ZUV0 252 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ASRGL1Q7L266 308 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 GRINAQ7Z429 371 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ERASQ7Z444 233 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TMEM144Q7Z5S9 345 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 AMIGO1Q86WK6 493 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TRAPPC5Q8IUR0 188 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 C4orf19Q8IY42 314 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 CERS5Q8N5B7 392 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 C12orf45Q8N5I9 185 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 CLDN22Q8N7P3 220 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 Q8N9G6 341 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 TSPAN14Q8NG11 270 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 OR5D13Q8NGL4 314 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 MARCH1Q8TCQ1 289 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 CD200R1Q8TD46 325 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 APH1BQ8WW43 257 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TMEM234Q8WY98 164 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 C11orf40Q8WZ69 217 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 DAZLQ92904 295 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 EMG1Q92979 244 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 TMEM45BQ96B21 275 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ANKRD9Q96BM1 317 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 BIRC7Q96CA5 298 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 RAB3CQ96E17 227 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 IGSF21Q96ID5 467 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 MAGEB18Q96M61 343 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 PANX3Q96QZ0 392 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ERGIC2Q96RQ1 377 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 VAT1Q99536 393 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TSNAXQ99598 290 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 SPAG8Q99932 426 aaPredicted RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 ECSITQ9BQ95 431 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 RTP3Q9BQQ7 232 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 TIMM29Q9BSF4 260 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 FEM1AQ9BSK4 669 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 C1orf50Q9BV19 199 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ST6GALNAC5Q9BVH7 336 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 GPR88Q9GZN0 384 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 NXF2Q9GZY0 626 aaKnown RBP4.63□□□□□ -1.67
VPS35-205ENST00000563984 SHARPINQ9H0F6 387 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 ARV1Q9H2C2 271 aa4.63□□□□□ -1.67
VPS35-205ENST00000563984 Q9H521 79 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms