RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TCTE1Q5JU00 501 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 CLLU1Q5K131 121 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 APOOLQ6UXV4 268 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 OR6K6Q8NGW6 343 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 SARGQ9BW04 601 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 FKRPQ9H9S5 495 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 CA10Q9NS85 328 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 RDH8Q9NYR8 311 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 PTTG3PQ9NZH4 202 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 DAPP1Q9UN19 280 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 COPS3Q9UNS2 423 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 C19orf53Q9UNZ5 99 aaPredicted RBP12.15□□□□□ -0.46
CLN3-210ENST00000563874 PCDHGA9Q9Y5G4 932 aaKnown RBP12.15□□□□□ -0.46
CLN3-210ENST00000563874 IER3IP1Q9Y5U9 82 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 TP53BP1Q12888 1972 aaPredicted RBP12.15□□□□□ -0.46
CLN3-210ENST00000563874 A0A1B0GVT2 93 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 H3BSH0 61 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 CDK2AP1O14519 115 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 SERPINA3P01011 423 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 RPL13AP3Q6NVV1 102 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 TEX19Q8NA77 164 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 GALNT11Q8NCW6 608 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 OR10G6Q8NH81 332 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 OR14C36Q8NHC7 312 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 CCL4L1Q8NHW4 92 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 GFI1Q99684 422 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 CACNA1CQ13936 2221 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 TEX51A0A1B0GUA7 166 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 A0A1W2PPL8 197 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 PIN1P1O15428 100 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 B3GALT2O43825 422 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 KHDRBS3O75525 346 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 UCHL1P09936 223 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 UGT2B7P16662 529 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SRMP19623 302 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 PSMB1P20618 241 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 RPS4Y1P22090 263 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 TLX1P31314 330 aaPredicted RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 EMDP50402 254 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 RPS15P62841 145 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 UBE2NLQ5JXB2 153 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ZPLD1Q8TCW7 415 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 NRIP3Q9NQ35 241 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ANKRD10Q9NXR5 420 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 HCN3Q9P1Z3 774 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 MGAT4CQ9UBM8 478 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ZNF69Q9UC07 566 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ZNF346Q9UL40 294 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 SCML1Q9UN30 329 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 MAB21L2Q9Y586 359 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SZT2Q5T011 3432 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 A0A1W2PQU0 124 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 MCIDASD6RGH6 385 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 TEX46H3BTG2 121 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 OGG1O15527 345 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 TSPAN9O75954 239 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 TIMP1P01033 207 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ATP1B1P05026 303 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ANXA7P20073 488 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 IGFALSP35858 605 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SRSF5Q13243 272 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 DYRK1AQ13627 763 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 FHL1Q13642 323 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 PDGFRLQ15198 375 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 C2orf27AQ580R0 203 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ALG10BQ5I7T1 473 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 FHL5Q5TD97 284 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 FAM199XQ6PEV8 388 aaPredicted RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 SLC35F2Q8IXU6 374 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 MARVELD3Q96A59 401 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 NMNAT3Q96T66 252 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 CNN2Q99439 309 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 C1QTNF7Q9BXJ2 289 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 GSX2Q9BZM3 304 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ACTR6Q9GZN1 396 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SRMSQ9H3Y6 488 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 C2orf42Q9NWW7 574 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 THAP10Q9P2Z0 257 aaPredicted RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 CA5BQ9Y2D0 317 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 STON1Q9Y6Q2 735 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 LTBP2Q14767 1821 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 C4orf47A7E2U8 309 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 KHNYNO15037 678 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 KAT7O95251 611 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 IFNGP01579 166 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 HNRNPA1P09651 372 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLN3-210ENST00000563874 ATXN8OSP0DMR3 200 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 RRASP10301 218 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 POLR2CP19387 275 aaPredicted RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 SLC6A6P31641 620 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 RPS15AP62244 130 aaKnown RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 USP53Q70EK8 1073 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SLITRK4Q8IW52 837 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 OR4N2Q8NGD1 307 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SLC25A38Q96DW6 304 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 ELMOD3Q96FG2 381 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 TSPAN10Q9H1Z9 355 aaPredicted RBP12.14□□□□□ -0.47
CLN3-210ENST00000563874 LIN7BQ9HAP6 207 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 HAO2Q9NYQ3 351 aa12.14□□□□□ -0.47
CLN3-210ENST00000563874 SLC17A4Q9Y2C5 497 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms