RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 OR52E2Q8NGJ4 325 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 SLC7A6Q92536 515 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 TNFRSF13CQ96RJ3 184 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 DCLRE1CQ96SD1 692 aaKnown RBP6.67□□□□□ -1.34
VPS13C-206ENST00000558338 GPX7Q96SL4 187 aaPredicted RBP6.67□□□□□ -1.34
VPS13C-206ENST00000558338 HCAR1Q9BXC0 346 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 ENKD1Q9H0I2 346 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 OR10A5Q9H207 317 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 ERVMER34-1Q9H9K5 563 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 PDE7BQ9NP56 450 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 RPRD1BQ9NQG5 326 aaKnown RBP6.67□□□□□ -1.34
VPS13C-206ENST00000558338 EXOSC3Q9NQT5 275 aaKnown RBP6.67□□□□□ -1.34
VPS13C-206ENST00000558338 CYSLTR2Q9NS75 346 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 EXTL2Q9UBQ6 330 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 GMEB2Q9UKD1 530 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 ERVK-19Q9WJR5 959 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 NPFFR2Q9Y5X5 522 aa6.67□□□□□ -1.34
VPS13C-206ENST00000558338 LINC00854A0A1B0GVQ3 168 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 FAM240BA0A1B0GVZ2 78 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SHISA3A0PJX4 238 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZC3H12DA2A288 527 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 FITM1A5D6W6 292 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 IMPA2O14732 288 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TFECO14948 347 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PLA2G10O15496 165 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 OGG1O15527 345 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 LRRTM2O43300 516 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 GPRIN2O60269 458 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SLC43A1O75387 559 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SC5DO75845 299 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 NCR1O76036 304 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 IFNA16P05015 189 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 YES1P07947 543 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MRPL3P09001 348 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CT45A8P0DMV1 189 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CT45A9P0DMV2 189 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CHRNB1P11230 501 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 APEHP13798 732 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 RAB3BP20337 219 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 NPR2P20594 1047 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 APEX1P27695 318 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 RPL4P36578 427 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 GRK6P43250 576 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 NR4A2P43354 598 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MAZP56270 477 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CLDN20P56880 219 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MRPS15P82914 257 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PITPNAQ00169 270 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CSTF1Q05048 431 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SLC3A1Q07837 685 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CDK5R1Q15078 307 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PON3Q15166 354 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TBRG1Q3YBR2 411 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CDONQ4KMG0 1287 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CT45A2Q5DJT8 189 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZNF362Q5T0B9 420 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 BICRALQ6AI39 1079 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TIGD3Q6B0B8 471 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 RPL22L1Q6P5R6 122 aaKnown RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 BRICD5Q6PL45 260 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MED25Q71SY5 747 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TRILQ7L0X0 811 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 NUP54Q7Z3B4 507 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CEACAM19Q7Z692 300 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SLC35F2Q8IXU6 374 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ARL14Q8N4G2 192 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 FAM71CQ8NEG0 241 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 OR14A16Q8NHC5 309 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 C16orf52Q8NHV5 167 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ABHD4Q8TB40 342 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 LIPHQ8WWY8 451 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 RFT1Q96AA3 541 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SMIM19Q96E16 107 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MVB12AQ96EY5 273 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MMABQ96EY8 250 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ART5Q96L15 291 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PGLYRP3Q96LB9 341 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 CMTM3Q96MX0 182 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SLC46A1Q96NT5 459 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 KCNJ15Q99712 375 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TIMP4Q99727 224 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MAP3K3Q99759 626 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 RAB33BQ9H082 229 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 MMP28Q9H239 520 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 C12orf10Q9HB07 376 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 UBQLN4Q9NRR5 601 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SOHLH2Q9NX45 425 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ABRACLQ9P1F3 81 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 POU2F3Q9UKI9 436 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ELOA3DA6NLF2 546 aaPredicted RBP6.66□□□□□ -1.34
VPS13C-206ENST00000558338 ZNF879B4DU55 563 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TMEM150CB9EJG8 249 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 TGFBR3LH3BV60 316 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SCDO00767 359 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 NGFRP08138 427 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 UBL4AP11441 157 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 PSKH1P11801 424 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 SRFP11831 508 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 IL9P15248 144 aa6.66□□□□□ -1.34
VPS13C-206ENST00000558338 HPGDP15428 266 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms