RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	OR5K2	Q8NHB8	316 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TCTEX1D2	Q8WW35	142 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLAMF9	Q96A28	289 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	DTD2	Q96FN9	168 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SFXN2	Q96NB2	322 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRAF4	Q9BUZ4	470 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC5A7	Q9GZV3	580 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM184C	Q9NVA4	438 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	MIA3	Q5JRA6	1907 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	LTBP3	Q9NS15	1303 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM82	A0PJX8	343 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRIM64	A6NGJ6	449 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR171	O14626	319 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	HYAL3	O43820	417 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADAMTS4	O75173	837 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RBMXL2	O75526	392 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLCO2B1	O94956	709 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PAPLN	O95428	1278 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR8G3P	P0DMU2	310 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	NPPB	P16860	134 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF16	P17020	682 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	CEBPB	P17676	345 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PSMB1	P20618	241 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	HLA-F	P30511	346 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RBMX	P38159	391 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	EIF2S3	P41091	472 aa	Known RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAP2B	P61225	183 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	S100A12	P80511	92 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB33A	Q14088	237 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	ERV3-1	Q14264	604 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PEA15	Q15121	130 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	LAIR1	Q6GTX8	287 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC29A4	Q7RTT9	530 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR155	Q7Z3F1	870 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC35F3	Q8IY50	421 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR51S1	Q8NGJ8	323 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	NANP	Q8TBE9	248 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC22A18	Q96BI1	424 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	MS4A7	Q9GZW8	240 aa	Predicted RBP	4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLEKHM1	Q9Y4G2	1056 aa		4.63	□□□□□ -1.67
SYNE2-223	ENST00000557005		A0A0D9SG52	128 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM129	A0AVI4	362 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARRDC5	A6NEK1	342 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005		E9PI62	339 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SYT5	O00445	386 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	PHYH	O14832	338 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	HCRTR2	O43614	444 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	NDUFB2	O95178	105 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	IGLV3-27	P01718	113 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	F13B	P05160	661 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	F3	P13726	295 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FPR3	P25089	353 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	EMD	P50402	254 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACTB	P60709	375 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACTG1	P63261	375 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CDK3	Q00526	305 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SFRP5	Q5T4F7	317 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR10K2	Q6IF99	312 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	NIPAL3	Q6P499	406 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	NHLRC1	Q6VVB1	395 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPAT4	Q86UL3	456 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TEX19	Q8NA77	164 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR5T1	Q8NG75	326 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR52N1	Q8NH53	320 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	TCEAL3	Q969E4	200 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	INSM2	Q96T92	566 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	MCOLN1	Q9GZU1	580 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	MED17	Q9NVC6	651 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF337	Q9Y3M9	751 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CROCC	Q5TZA2	2017 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	RAB19	A4D1S5	217 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ANKRD61	A6NGH8	418 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005		A8MVJ9	347 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	C2orf74	A8MZ97	194 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005		D6RAR5	112 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CHRM4	P08173	479 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	GIP	P09681	153 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF28	P17035	718 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SYN1	P17600	705 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SIRPA	P78324	504 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZP2	Q05996	745 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	IRF3	Q14653	427 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF79	Q15937	498 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF628	Q5EBL2	1059 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	FAM27D1	Q5T7N8	215 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR6V1	Q8N148	313 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ESX1	Q8N693	406 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSNK1A1L	Q8N752	337 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF283	Q8N7M2	679 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	KIAA1958	Q8N8K9	716 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLA2G15	Q8NCC3	412 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR8D4	Q8NGM9	314 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	MMAB	Q96EY8	250 aa	Predicted RBP	4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC41A2	Q96JW4	573 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	RNF170	Q96K19	258 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	WDFY2	Q96P53	400 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC38A3	Q99624	504 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	DPYSL5	Q9BPU6	564 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	MS4A8	Q9BY19	250 aa		4.62	□□□□□ -1.67
SYNE2-223	ENST00000557005	NXF2	Q9GZY0	626 aa	Known RBP	4.62	□□□□□ -1.67

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