RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PCDHGB7Q9Y5F8 929 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 HEATR5BQ9P2D3 2071 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 NID1P14543 1247 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 HLA-DMAP28067 261 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 EVI2BP34910 448 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 EMDP50402 254 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 SNTA1Q13424 505 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 ATXN7L3Q14CW9 347 aaPredicted RBP13.71□□□□□ -0.21
CUX1-215ENST00000556210 HDDC2Q7Z4H3 204 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 BMFQ96LC9 184 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 PDCD10Q9BUL8 212 aa13.71□□□□□ -0.21
CUX1-215ENST00000556210 TBX6O95947 436 aaPredicted RBP13.71□□□□□ -0.22
CUX1-215ENST00000556210 CTSBP07858 339 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 HIST1H1CP16403 213 aaKnown RBP13.71□□□□□ -0.22
CUX1-215ENST00000556210 PEBP1P30086 187 aaKnown RBP13.71□□□□□ -0.22
CUX1-215ENST00000556210 MAP3K8P41279 467 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 AKR1D1P51857 326 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 GFERP55789 205 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 YIF1BQ5BJH7 314 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 KRT77Q7Z794 578 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 FTMTQ8N4E7 242 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 ZNF527Q8NB42 609 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 OR4C3Q8NH37 302 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 ABHD4Q8TB40 342 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 OR51J1Q9H342 316 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 GLTPQ9NZD2 209 aa13.71□□□□□ -0.22
CUX1-215ENST00000556210 SYPP08247 313 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 CCKBRP32239 447 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 PITPNBP48739 271 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 LRRC37A5PQ49AS3 106 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DMRTC1Q5HYR2 192 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 PXDC1Q5TGL8 231 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 C12orf73Q69YU5 71 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 TMEM52Q8NDY8 209 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DNAAF1Q8NEP3 725 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 SDHCQ99643 169 aaPredicted RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 RXFP3Q9NSD7 469 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 BAIAP2Q9UQB8 552 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 A0A1B0GW55 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 IDSB3KWA1 339 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 NPIPB8E9PQR5 432 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 TEX46H3BTG2 121 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 SLC43A1O75387 559 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 GATBO75879 557 aaKnown RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 PDGFAP04085 211 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 H2AFB2P0C5Z0 115 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4L2P0CJ85 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4L3P0CJ86 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4L4P0CJ87 422 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4L5P0CJ88 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4L6P0CJ89 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4L7P0CJ90 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 HTR1FP30939 366 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 RABIFP47224 123 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DNASE1L1P49184 302 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DHPSP49366 369 aaPredicted RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 PLCXD2Q0VAA5 305 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 ALG10Q5BKT4 473 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 ARHGAP11AQ6P4F7 1023 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DPY19L4Q7Z388 723 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 SLC35F2Q8IXU6 374 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 CHAC2Q8WUX2 184 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 PITHD1Q9GZP4 211 aaPredicted RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 CDCP1Q9H5V8 836 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 TMEM74BQ9NUR3 256 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 ASB6Q9NWX5 421 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 DUX4Q9UBX2 424 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 PFDN2Q9UHV9 154 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 CACNG2Q9Y698 323 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 UBE2QL1A1L167 161 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 SERTM1A2A2V5 107 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 ZNF879B4DU55 563 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 PRAMEF26H0Y7S4 382 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 K7EQS6 105 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 SURF4O15260 269 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 NUPL2O15504 423 aaKnown RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 SEMG1P04279 462 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 TMEM69Q5SWH9 247 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 CARD17Q5XLA6 110 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 MED25Q71SY5 747 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 FCRLAQ7L513 359 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 PAQR7Q86WK9 346 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 GPALPP1Q8IXQ4 340 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 OR10H5Q8NGA6 315 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 OR5J2Q8NH18 312 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 MICU1Q9BPX6 476 aa13.7□□□□□ -0.22
CUX1-215ENST00000556210 ZMAT3Q9HA38 289 aaKnown RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 TPRP12270 2363 aaKnown RBP13.7□□□□□ -0.22
CUX1-215ENST00000556210 DCDC2BA2VCK2 349 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 L7N2F9 121 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 TRIM3O75382 744 aaPredicted RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 SERPINA3P01011 423 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 LIPCP11150 499 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 ZNF823P16415 610 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 ARRB1P49407 418 aaPredicted RBP13.69□□□□□ -0.22
CUX1-215ENST00000556210 FAAP20Q6NZ36 180 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 TMEM184AQ6ZMB5 413 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 RCBTB1Q8NDN9 531 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 OR51Q1Q8NH59 317 aa13.69□□□□□ -0.22
CUX1-215ENST00000556210 CEP76Q8TAP6 659 aa13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms