RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GPIP06744 558 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 PRG2P13727 222 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 HOXC12P31275 282 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 OR2B6P58173 313 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 RBBP4Q09028 425 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 SLC17A1Q14916 467 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 ADRM1Q16186 407 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 RUNDC3AQ59EK9 446 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 C5orf46Q6UWT4 87 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 BHLHA15Q7RTS1 189 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 ATG4DQ86TL0 474 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 SERPINA11Q86U17 422 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 TMEM45BQ96B21 275 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 APH1AQ96BI3 265 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 PRSS50Q9UI38 385 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 DCTN4Q9UJW0 460 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 NOSIPQ9Y314 301 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 NDUFAF1Q9Y375 327 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 FLVCR1Q9Y5Y0 555 aa14.19□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF469Q96JG9 3925 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 AQP7P3A6NL99 342 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 PAX1P15863 534 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 NCF2P19878 526 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 SLC6A2P23975 617 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 EDNRAP25101 427 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 TAB1Q15750 504 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 COQ5Q5HYK3 327 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 TIMM23BQ5SRD1 257 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF704Q6ZNC4 412 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 NET1Q7Z628 596 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 DHDDSQ86SQ9 333 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF100Q8IYN0 542 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 HIPK4Q8NE63 616 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 NFKBIDQ8NI38 313 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 PLPPR2Q96GM1 343 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 ANKRD27Q96NW4 1050 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 RSPO3Q9BXY4 272 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 CCDC134Q9H6E4 229 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 DLL4Q9NR61 685 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 PARPBPQ9NWS1 579 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF446Q9NWS9 450 aa14.18□□□□□ -0.14
CCDC88C-209ENST00000554872 A0A0G2JND7 137 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 PDLIM1O00151 329 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 ANGPT2O15123 496 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 FRS3O43559 492 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 RAMP1O60894 148 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 MRPL33O75394 65 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 VAMP5O95183 116 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 FOSL1P15407 271 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 CCNA2P20248 432 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 IGHV1-2P23083 117 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 NTF4P34130 210 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 P2RY4P51582 365 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 PCBP3P57721 371 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 ADAM8P78325 824 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 SCARB2Q14108 478 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 NCMAPQ5T1S8 102 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 SHEQ5VZ18 495 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 FAM91A1Q658Y4 838 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 RETREG3Q86VR2 466 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 WFDC8Q8IUA0 241 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 KRTAP1-3Q8IUG1 177 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 CCDC103Q8IW40 242 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 CADM2Q8N3J6 435 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF433Q8N7K0 673 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF611Q8N823 705 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 C1orf162Q8NEQ5 155 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 MFSD8Q8NHS3 518 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 DNAJA4Q8WW22 397 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 BOD1Q96IK1 185 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 ZNF607Q96SK3 696 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 CGREF1Q99674 301 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 AMBRA1Q9C0C7 1298 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 ESRP2Q9H6T0 727 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 TAS2R16Q9NYV7 291 aa14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 TESQ9UGI8 421 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 FLNAP21333 2647 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-209ENST00000554872 OR5H1A6NKK0 313 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 FTCDNL1E5RQL4 147 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 HS3ST1O14792 307 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 SERPINB7O75635 380 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 TROVE2P10155 538 aaKnown RBP eCLIP14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 GGT1P19440 569 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 CEACAM7Q14002 265 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 OTUD3Q5T2D3 398 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 C1orf140Q5VVS0 124 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 PRSS57Q6UWY2 283 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 PTOV1Q86YD1 416 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 SLC30A8Q8IWU4 369 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 C11orf65Q8NCR3 313 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 TAPBPLQ9BX59 468 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 TRIM2Q9C040 744 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 KAT8Q9H7Z6 458 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 UBTD1Q9HAC8 227 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 ASB6Q9NWX5 421 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 ANGPT4Q9Y264 503 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 RNF115Q9Y4L5 304 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 VPS13CQ709C8 3753 aa14.16□□□□□ -0.14
CCDC88C-209ENST00000554872 LYZL6O75951 148 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms