RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 TMEM247A6NEH6 219 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 NPIPA7E9PJI5 369 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 EFNA2O43921 213 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 DEAF1O75398 565 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-215ENST00000554656 IFNA14P01570 189 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 LINGO3P0C6S8 592 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 NPIPA8P0DM63 369 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 ETFAP13804 333 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 RNF144AP50876 292 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-215ENST00000554656 RAC1P63000 192 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 CDK6Q00534 326 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 KRTAP1-1Q07627 177 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 FOXF1Q12946 379 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 SCARB2Q14108 478 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 TRIP10Q15642 601 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 BEX5Q5H9J7 111 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 OGFRL1Q5TC84 451 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-215ENST00000554656 REEP3Q6NUK4 255 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 ZCCHC12Q6PEW1 402 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 ZNF704Q6ZNC4 412 aaPredicted RBP9.42□□□□□ -0.9
SHMT2-215ENST00000554656 SZRD1Q7Z422 152 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 OR5AK3PQ8NH89 298 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 OR2V1Q8NHB1 315 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 PNPT1Q8TCS8 783 aaKnown RBP9.42□□□□□ -0.9
SHMT2-215ENST00000554656 PYURFQ96I23 114 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 TMEM204Q9BSN7 226 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 SRXN1Q9BYN0 137 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 EMC9Q9Y3B6 208 aa9.42□□□□□ -0.9
SHMT2-215ENST00000554656 CHD3Q12873 2000 aaKnown RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 A0A1W2PQD3 144 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 DUXAA6NLW8 204 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 H0YJX3 145 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 HMGN4O00479 90 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 NTN1O95631 604 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PAX1P15863 534 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 MATN1P21941 496 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PCSK6P29122 969 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 MAGEA2P43356 314 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ERFP50548 548 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 CTBP2P56545 445 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PCBP3P57721 371 aaKnown RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 SESN3P58005 492 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ZNF117Q03924 483 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 TP53BP2Q13625 1128 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 TSC22D1Q15714 1073 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ATP6AP1Q15904 470 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ZNF239Q16600 458 aaKnown RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 NDUFAF6Q330K2 333 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 COX20Q5RI15 118 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 HBMQ6B0K9 141 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 SEZ6L2Q6UXD5 910 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ESPNLQ6ZVH7 1005 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PLEKHM3Q6ZWE6 761 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ATG4DQ86TL0 474 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 WFDC8Q8IUA0 241 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 LILRA2Q8N149 483 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PACRGLQ8N7B6 248 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ANKFN1Q8N957 763 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 LILRB1Q8NHL6 650 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 RNF128Q8TEB7 428 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ABHD3Q8WU67 409 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 NRG4Q8WWG1 115 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 RASSF5Q8WWW0 418 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ROBO4Q8WZ75 1007 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 CDS1Q92903 461 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ZBTB8AQ96BR9 441 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 SLC47A1Q96FL8 570 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PLPPR2Q96GM1 343 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 CENPNQ96H22 339 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PKP2Q99959 881 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 BDH2Q9BUT1 245 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ACTRT3Q9BYD9 372 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 PRRG4Q9BZD6 226 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ACTR6Q9GZN1 396 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 VCXQ9H320 206 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 C12orf49Q9H741 205 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 UBQLN4Q9NRR5 601 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ZNF701Q9NV72 531 aaPredicted RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 ADPRHL2Q9NX46 363 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 GIN1Q9NXP7 522 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 CALML5Q9NZT1 146 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 P2RX2Q9UBL9 471 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 MCTS1Q9ULC4 181 aaKnown RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 AURKCQ9UQB9 309 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 LIPT1Q9Y234 373 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 LRRC42Q9Y546 428 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 KCNE3Q9Y6H6 103 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 RTTNQ86VV8 2226 aa9.41□□□□□ -0.9
SHMT2-215ENST00000554656 FBN1P35555 2871 aaKnown RBP9.41□□□□□ -0.9
SHMT2-215ENST00000554656 FAM171A2A8MVW0 826 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 C5orf58C9J3I9 102 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 INAFM1C9JVW0 142 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 HS3ST1O14792 307 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 GCM2O75603 506 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-215ENST00000554656 PRSS23O95084 383 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 SYNGR4O95473 234 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 CNOT4O95628 575 aaKnown RBP9.4□□□□□ -0.9
SHMT2-215ENST00000554656 PLGP00747 810 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-215ENST00000554656 SERPINA1P01009 418 aa9.4□□□□□ -0.9
SHMT2-215ENST00000554656 HMGN2P05204 90 aaKnown RBP9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms