RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ARL6IP1Q15041 203 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 KLHL38Q2WGJ6 581 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 BCL7AQ4VC05 210 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 PRR30Q53SZ7 412 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 CARD16Q5EG05 197 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 C1orf220Q5T0J3 134 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 LCE1CQ5T751 118 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 LCE1BQ5T7P3 118 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 OR52E8Q6IFG1 317 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 WDR74Q6RFH5 385 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 PPP1R27Q86WC6 154 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 VRK2Q86Y07 508 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 ECHDC2Q86YB7 292 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 TGIF2LYQ8IUE0 185 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 FTMTQ8N4E7 242 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 C14orf178Q8N769 122 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 OR4K14Q8NGD5 310 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 OR9A1PQ8NGU1 263 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 MAGEE2Q8TD90 523 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 CHCHD10Q8WYQ3 142 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 CXorf40BQ96DE9 158 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 C16orf74Q96GX8 76 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 MAGEB18Q96M61 343 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 NICN1Q9BSH3 213 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 REEP4Q9H6H4 257 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 NHEJ1Q9H9Q4 299 aaPredicted RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 MARCH5Q9NX47 278 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 THUMPD1Q9NXG2 353 aaKnown RBP2.96□□□□□ -1.94
VPS29-205ENST00000548539 CD274Q9NZQ7 290 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 IL17CQ9P0M4 197 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 B4GALT7Q9UBV7 327 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 SUN2Q9UH99 717 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 TRAF3IP3Q9Y228 551 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 UGT2A1Q9Y4X1 527 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 PLEKHH1Q9ULM0 1364 aa2.96□□□□□ -1.94
VPS29-205ENST00000548539 GFYI3L273 518 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 UBXN8O00124 270 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 UGT1A9O60656 530 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 PALMO75781 387 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 LY6G6DO95868 133 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 LGI1O95970 557 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 TIMP1P01033 207 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 IGHV3-48P01763 117 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 CD1EP15812 388 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 KLK7P49862 253 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 SULT1E1P49888 294 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 HNRNPA3P51991 378 aaKnown RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 CSNK1G2P78368 415 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 NDPQ00604 133 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 BST1Q10588 318 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 OXA1LQ15070 435 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 IMMTQ16891 758 aaKnown RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 FILIP1LQ4L180 1135 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 SAMD4BQ5PRF9 694 aaKnown RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 CCDC183Q5T5S1 534 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 ENPP6Q6UWR7 440 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 HSDL2Q6YN16 418 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 BBS1Q8NFJ9 593 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 DNAJA4Q8WW22 397 aaPredicted RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 UFD1Q92890 307 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 NT5C3BQ969T7 300 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 TBRG4Q969Z0 631 aaKnown RBP eCLIP2.95□□□□□ -1.94
VPS29-205ENST00000548539 FAM122AQ96E09 287 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 CMTM7Q96FZ5 175 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 SEC22AQ96IW7 307 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 SMIM14Q96QK8 99 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 PLEKHF1Q96S99 279 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 FMO2Q99518 471 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 EBF4Q9BQW3 602 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 MRPL45Q9BRJ2 306 aaKnown RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 SLC39A3Q9BRY0 314 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 NAT9Q9BTE0 207 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 YTHDF1Q9BYJ9 559 aaKnown RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 RNF167Q9H6Y7 350 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 METTL7AQ9H8H3 244 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 TP53TG3Q9ULZ0 132 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 RPL36Q9Y3U8 105 aaKnown RBP2.95□□□□□ -1.94
VPS29-205ENST00000548539 TNRQ92752 1358 aa2.95□□□□□ -1.94
VPS29-205ENST00000548539 NSG1A0A0A6YYJ2 146 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 A6NIZ1 184 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 OR52A4PA6NMU1 304 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TMEM110-MUSTN1A8MSY1 372 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 HDAC3O15379 428 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 CLDN9O95484 217 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 UGT1A5P35504 534 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 BTDP43251 543 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TPMTP51580 245 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 KRTAP10-1P60331 282 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 ACTR3P61158 418 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 RAP1BP61224 184 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TGFBR3Q03167 851 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 HERPUD1Q15011 391 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 FHL5Q5TD97 284 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 UTS2BQ765I0 119 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 ZNF571Q7Z3V5 609 aaPredicted RBP2.94□□□□□ -1.94
VPS29-205ENST00000548539 SLC26A11Q86WA9 606 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 TRIM69Q86WT6 500 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 SLC22A9Q8IVM8 553 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 CDH26Q8IXH8 852 aa2.94□□□□□ -1.94
VPS29-205ENST00000548539 UBE2J2Q8N2K1 259 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms