RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 NXF5Q9H1B4 397 aaKnown RBP4.65□□□□□ -1.66
CLIP1-217ENST00000543205 GPR35Q9HC97 309 aa4.65□□□□□ -1.66
CLIP1-217ENST00000543205 Q9N2J8 555 aa4.65□□□□□ -1.66
CLIP1-217ENST00000543205 NTMQ9P121 344 aa4.65□□□□□ -1.66
CLIP1-217ENST00000543205 MRTO4Q9UKD2 239 aaKnown RBP4.65□□□□□ -1.66
CLIP1-217ENST00000543205 VPS4AQ9UN37 437 aa4.65□□□□□ -1.66
CLIP1-217ENST00000543205 FAF1Q9UNN5 650 aaPredicted RBP4.65□□□□□ -1.66
CLIP1-217ENST00000543205 DTX4Q9Y2E6 619 aa4.65□□□□□ -1.66
CLIP1-217ENST00000543205 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.65□□□□□ -1.66
CLIP1-217ENST00000543205 PIEZO2Q9H5I5 2752 aa4.65□□□□□ -1.66
CLIP1-217ENST00000543205 TRAV17A0A0B4J275 112 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 HTR3EA5X5Y0 456 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 E9PLN8 166 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 TP53I11O14683 189 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ANGPT2O15123 496 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 TO15178 435 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SNX3O60493 162 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 REM1O75628 298 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SLC25A12O75746 678 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 C1QL1O75973 258 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SOX30O94993 753 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PSMG1O95456 288 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 NADKO95544 446 aaPredicted RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 MT-ATP6P00846 226 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 HMGN2P05204 90 aaKnown RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 KRT16P08779 473 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ALOX5P09917 674 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 MATN1P21941 496 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 IL12BP29460 328 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 GABRA3P34903 492 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ZFP36L2P47974 494 aaKnown RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 TMED10P49755 219 aaKnown RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 CAMPP49913 170 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 TNFSF10P50591 281 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PNLIPRP2P54317 469 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 UCP2P55851 309 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 RPP38P78345 283 aaKnown RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PLCXD2Q0VAA5 305 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 NFATC3Q12968 1075 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 KLF10Q13118 480 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 RCAN2Q14206 197 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF169Q14929 603 aaPredicted RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 MAPRE2Q15555 327 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 NADK2Q4G0N4 442 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 CD300LDQ6UXZ3 194 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 RTL4Q6ZR62 310 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SLC46A3Q7Z3Q1 461 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 C6orf120Q7Z4R8 191 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 WDR53Q7Z5U6 358 aaPredicted RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 FUNDC1Q8IVP5 155 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SERPINA12Q8IW75 414 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PRR22Q8IZ63 422 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SLC34A3Q8N130 599 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 CYP4Z2PQ8N1L4 340 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 UXS1Q8NBZ7 420 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 OR5M3Q8NGP4 307 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PNPLA2Q96AD5 504 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PGAM5Q96HS1 289 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 BTBD9Q96Q07 612 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 CCT8L2Q96SF2 557 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 VKORC1Q9BQB6 163 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 INPP5KQ9BT40 448 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 LMF2Q9BU23 707 aaKnown RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ACTRT3Q9BYD9 372 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF350Q9GZX5 532 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 HRH4Q9H3N8 390 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF385DQ9H6B1 395 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 TRIM45Q9H8W5 580 aaPredicted RBP4.65□□□□□ -1.67
CLIP1-217ENST00000543205 SAR1AQ9NR31 198 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 UBAP1Q9NZ09 502 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 PEMTQ9UBM1 199 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 B3GNT3Q9Y2A9 372 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 ARL2BPQ9Y2Y0 163 aa4.65□□□□□ -1.67
CLIP1-217ENST00000543205 MYO9AB2RTY4 2548 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 MED13Q9UHV7 2174 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 A0A1W2PP18 115 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 ANXA2P2A6NMY6 339 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 J3QKU1 62 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 ETV2O00321 342 aaPredicted RBP4.64□□□□□ -1.67
CLIP1-217ENST00000543205 SLC22A2O15244 555 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 ZNF354AO60765 605 aaPredicted RBP4.64□□□□□ -1.67
CLIP1-217ENST00000543205 SHOX2O60902 331 aaPredicted RBP4.64□□□□□ -1.67
CLIP1-217ENST00000543205 SLC43A1O75387 559 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 KRT75O95678 551 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 FAM107AO95990 144 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 IL1AP01583 271 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 P04436 131 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 SP1P08047 785 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 CT45A8P0DMV1 189 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 CT45A9P0DMV2 189 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 NAGAP17050 411 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 THBS4P35443 961 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 CDKN1AP38936 164 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 CDKN2CP42773 168 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 RFX3P48380 749 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 ANXA11P50995 505 aaKnown RBP4.64□□□□□ -1.67
CLIP1-217ENST00000543205 PSMD4P55036 377 aaKnown RBP4.64□□□□□ -1.67
CLIP1-217ENST00000543205 FBXW4P57775 412 aa4.64□□□□□ -1.67
CLIP1-217ENST00000543205 MRPS22P82650 360 aaKnown RBP4.64□□□□□ -1.67
CLIP1-217ENST00000543205 PSG6Q00889 435 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms