RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 XPNPEP2O43895 674 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 CECR9P0C854 216 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 FAM157BP0CG42 384 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 CD1DP15813 335 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 TCN1P20061 433 aaPredicted RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 TYK2P29597 1187 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 SERPINB9P50453 376 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 OR4D1Q15615 310 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 ZKSCAN8Q15776 578 aaPredicted RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 AVPI1Q5T686 147 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 HHATQ5VTY9 493 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 ZC3HC1Q86WB0 502 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 IL17RDQ8NFM7 739 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 GPR151Q8TDV0 419 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 YIPF5Q969M3 257 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 ATP6V1E2Q96A05 226 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 RBBP8Q99708 897 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 ELAC2Q9BQ52 826 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 LMF2Q9BU23 707 aaKnown RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 UBQLN4Q9NRR5 601 aa7.86□□□□□ -1.15
USP28-205ENST00000537706 C19orf53Q9UNZ5 99 aaPredicted RBP7.86□□□□□ -1.15
USP28-205ENST00000537706 A0A1W2PQD3 144 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 CLDN25C9JDP6 229 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 ULK1O75385 1050 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 DEAF1O75398 565 aaPredicted RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 PIAS1O75925 651 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 HSPA4LO95757 839 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 TIA1P31483 386 aaKnown RBP eCLIP7.85□□□□□ -1.15
USP28-205ENST00000537706 DIO1P49895 249 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 P2RX1P51575 399 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 FOXG1P55316 489 aaPredicted RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 LCN2P80188 198 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 SNTB2Q13425 540 aaKnown RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 FRG1Q14331 258 aaKnown RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 HIKESHIQ53FT3 197 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 CCBE1Q6UXH8 406 aaPredicted RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 TMPPEQ6ZT21 453 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 CTAGE3PQ8IX95 158 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 FAM169BQ8N8A8 192 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 POMGNT2Q8NAT1 580 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 OR6Y1Q8NGX8 325 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 LRRC8CQ8TDW0 803 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 SLC47A1Q96FL8 570 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 GAL3ST1Q99999 423 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 CRNNQ9UBG3 495 aaPredicted RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 GPR160Q9UJ42 338 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 GRID1Q9ULK0 1009 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 SLC12A4Q9UP95 1085 aa7.85□□□□□ -1.15
USP28-205ENST00000537706 SPIN1Q9Y657 262 aaPredicted RBP7.85□□□□□ -1.15
USP28-205ENST00000537706 SYCE1LA8MT33 242 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 CXorf49A8MYA2 514 aaPredicted RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 TRIM49D1C9J1S8 452 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 ANKRD65E5RJM6 399 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 HOXA3O43365 443 aaPredicted RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 EFNA2O43921 213 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 GSTA1P08263 222 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 SNRPAP09012 282 aaKnown RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 CALCRP30988 508 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 RPS23P62266 143 aaKnown RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 HGFACQ04756 655 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 CD69Q07108 199 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 HEPACAMQ14CZ8 416 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 TBRG1Q3YBR2 411 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 CGB2Q6NT52 195 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 TRMT10BQ6PF06 316 aaKnown RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 L3MBTL4Q8NA19 623 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 ZNF527Q8NB42 609 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 SLC16A11Q8NCK7 471 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 PHOSPHO1Q8TCT1 267 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 TCP10LQ8TDR4 215 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 SLC25A43Q8WUT9 341 aaPredicted RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 BOD1Q96IK1 185 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 PAIP2Q9BPZ3 127 aaKnown RBP7.84□□□□□ -1.15
USP28-205ENST00000537706 SLC35C2Q9NQQ7 365 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 SLC7A10Q9NS82 523 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 SEC14L4Q9UDX3 406 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 ARL2BPQ9Y2Y0 163 aa7.84□□□□□ -1.15
USP28-205ENST00000537706 ARPC4-TTLL3A0A0A6YYG9 625 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 SRRM5B3KS81 715 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 GTPBP1O00178 669 aaKnown RBP7.84□□□□□ -1.16
USP28-205ENST00000537706 EDF1O60869 148 aaKnown RBP7.84□□□□□ -1.16
USP28-205ENST00000537706 MPIG6BO95866 241 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 TFPIP10646 304 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 HOXB1P14653 301 aaPredicted RBP7.84□□□□□ -1.16
USP28-205ENST00000537706 NTSP30990 170 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 ETV4P43268 484 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 NCBP2P52298 156 aaKnown RBP eCLIP7.84□□□□□ -1.16
USP28-205ENST00000537706 SLC16A1P53985 500 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 KRTAP10-3P60369 221 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 ZNF154Q13106 437 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 NRN1LQ496H8 165 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 FRG2Q64ET8 278 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 C9orf139Q6ZV77 190 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 TRPM8Q7Z2W7 1104 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 C10orf67Q8IYJ2 551 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 TMEM86BQ8N661 226 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 OR52E2Q8NGJ4 325 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 OR4C3Q8NH37 302 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 JADE3Q92613 823 aa7.84□□□□□ -1.16
USP28-205ENST00000537706 CDKL2Q92772 493 aa7.84□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms