RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FBXL14Q8N1E6 418 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 ANKFN1Q8N957 763 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 WDR31Q8NA23 367 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 ELOA3Q8NG57 546 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 PMM1Q92871 262 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 DDIT4LQ96D03 193 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 INPP5KQ9BT40 448 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 REPIN1Q9BWE0 567 aaKnown RBP9.96□□□□□ -0.82
VPS28-214ENST00000531032 NUF2Q9BZD4 464 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 SLC38A1Q9H2H9 487 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 MEAF6Q9HAF1 191 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 SLC7A10Q9NS82 523 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 PARPBPQ9NWS1 579 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 OSGIN1Q9UJX0 560 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 SLC9A8Q9Y2E8 581 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 TMED7Q9Y3B3 224 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 ALPK2Q86TB3 2170 aa9.96□□□□□ -0.82
VPS28-214ENST00000531032 ZC3H12DA2A288 527 aaKnown RBP9.95□□□□□ -0.82
VPS28-214ENST00000531032 M0R1B8 84 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 CCNA2P20248 432 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 TACR3P29371 465 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 S100A3P33764 101 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 SLC1A3P43003 542 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 FABP6P51161 128 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 VLDLRP98155 873 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 SLC25A3Q00325 362 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 BST1Q10588 318 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 RAB35Q15286 201 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 TMEM249Q2WGJ8 235 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 CHRFAM7AQ494W8 412 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 PAQR6Q6TCH4 344 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 LRRC74BQ6ZQY2 392 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 DEPDC4Q8N2C3 294 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 ZNF525Q8N782 197 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 TRIML2Q8N7C3 387 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 TMEM45BQ96B21 275 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 TEX37Q96LM6 180 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 TNFRSF13CQ96RJ3 184 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 NAA11Q9BSU3 229 aaPredicted RBP9.95□□□□□ -0.82
VPS28-214ENST00000531032 SLC17A5Q9NRA2 495 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 AMDHD2Q9Y303 409 aa9.95□□□□□ -0.82
VPS28-214ENST00000531032 YLPM1P49750 1951 aaKnown RBP9.95□□□□□ -0.82
VPS28-214ENST00000531032 CFAP73A6NFT4 308 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 CCDC154A6NI56 674 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 PGRP06401 933 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 ALDOCP09972 364 aaKnown RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 SLC25A16P16260 332 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 IL7RP16871 459 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 MPGP29372 298 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 IL12AP29459 219 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 CDKN2CP42773 168 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 ANXA11P50995 505 aaKnown RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 MAGOHP61326 146 aaKnown RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 UFM1P61960 85 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 TGFBR3Q03167 851 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 EPS8Q12929 822 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 GNA13Q14344 377 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 TNFAIP8L3Q5GJ75 292 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 MRPL2Q5T653 305 aaKnown RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 TSPO2Q5TGU0 170 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 C9orf135Q5VTT2 229 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 ATG16L1Q676U5 607 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 LSRQ86X29 649 aaPredicted RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 WDR60Q8WVS4 1066 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 FAM168AQ92567 244 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 HTRA1Q92743 480 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 BOD1Q96IK1 185 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 PANX1Q96RD7 426 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 C1QTNF6Q9BXI9 259 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 ADAM19Q9H013 955 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 MTHFD2LQ9H903 347 aaPredicted RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 FKRPQ9H9S5 495 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 AIG1Q9NVV5 245 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 TMEM160Q9NX00 188 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 UPB1Q9UBR1 384 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 PRDM4Q9UKN5 801 aa9.94□□□□□ -0.82
VPS28-214ENST00000531032 HEATR1Q9H583 2144 aaKnown RBP9.94□□□□□ -0.82
VPS28-214ENST00000531032 DSPPQ9NZW4 1301 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 LIPT2A6NK58 231 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 TRPC5OSA6NMA1 111 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 RNF212BA8MTL3 300 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 SDHDO14521 159 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 DBIP07108 87 aaKnown RBP9.93□□□□□ -0.82
VPS28-214ENST00000531032 CSF3P09919 207 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 FAM157CP0CG43 387 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 UQCRBP14927 111 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 APOBEC3AP31941 199 aaPredicted RBP9.93□□□□□ -0.82
VPS28-214ENST00000531032 EFNA4P52798 201 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 NME5P56597 212 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 LRRC74AQ0VAA2 488 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 MPP2Q14168 576 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 MAPK11Q15759 364 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 GSTA3Q16772 222 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 COX20Q5RI15 118 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 OTUD3Q5T2D3 398 aaPredicted RBP9.93□□□□□ -0.82
VPS28-214ENST00000531032 PHC2Q8IXK0 858 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 ZNF440Q8IYI8 595 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 ZIC4Q8N9L1 334 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 POMGNT2Q8NAT1 580 aa9.93□□□□□ -0.82
VPS28-214ENST00000531032 OR9K2Q8NGE7 335 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms