RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FKRPQ9H9S5 495 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 ZNF229Q9UJW7 825 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 WASF3Q9UPY6 502 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 BAIAP2Q9UQB8 552 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 TPRKBQ9Y3C4 175 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 WDFY3Q8IZQ1 3526 aa19.03■□□□□ 0.64
VPS28-208ENST00000527797 A0A087WXM4 84 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 SHISA8B8ZZ34 492 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 TLX2O43763 284 aaPredicted RBP19.02■□□□□ 0.64
VPS28-208ENST00000527797 XPNPEP2O43895 674 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 FAM20BO75063 409 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 AHSA1O95433 338 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 MT-ATP6P00846 226 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 BGLAPP02818 100 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 HIST1H2ABP04908 130 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 ASAH2BP0C7U1 165 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 HK1P19367 917 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 GRK5P34947 590 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 CDH15P55291 814 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 GABARAPL2P60520 117 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 ANKDD1AQ495B1 522 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 C1QL3Q5VWW1 255 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 THSD4Q6ZMP0 1018 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 HIST3H2AQ7L7L0 130 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 LNX2Q8N448 690 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 FAM26EQ8N5C1 309 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 HIST1H2ACQ93077 130 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 DDIT4LQ96D03 193 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 PLEKHA8Q96JA3 519 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 SIGLEC12Q96PQ1 595 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 DKKL1Q9UK85 242 aa19.02■□□□□ 0.64
VPS28-208ENST00000527797 BHLHE40O14503 412 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 KLK10O43240 276 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 OR2T1O43869 369 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 PRKYO43930 277 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 ATP6V1B1P15313 513 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 CCL11P51671 97 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 PRPS1P60891 318 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 RPS4XP62701 263 aaKnown RBP19.01■□□□□ 0.63
VPS28-208ENST00000527797 EFNB1P98172 346 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 MFAP5Q13361 173 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 ZNF800Q2TB10 664 aaPredicted RBP eCLIP19.01■□□□□ 0.63
VPS28-208ENST00000527797 FAM69AQ5T7M9 428 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 OR6S1Q8NH40 331 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 TMEM163Q8TC26 289 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 PTDSS2Q9BVG9 487 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 OR11A1Q9GZK7 315 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 DEPPQ9NTK1 212 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 PLCXD1Q9NUJ7 323 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 TUBA8Q9NY65 449 aaPredicted RBP19.01■□□□□ 0.63
VPS28-208ENST00000527797 MSRB2Q9Y3D2 182 aa19.01■□□□□ 0.63
VPS28-208ENST00000527797 SPIN1Q9Y657 262 aaPredicted RBP19.01■□□□□ 0.63
VPS28-208ENST00000527797 A0A0G2JMM0 328 aa19■□□□□ 0.63
VPS28-208ENST00000527797 A0A1W2PPB8 328 aa19■□□□□ 0.63
VPS28-208ENST00000527797 A0A1W2PRS3 328 aa19■□□□□ 0.63
VPS28-208ENST00000527797 SH3D21A4FU49 640 aa19■□□□□ 0.63
VPS28-208ENST00000527797 KIR3DP1A8MWS1 328 aa19■□□□□ 0.63
VPS28-208ENST00000527797 PTGES3LE9PB15 166 aa19■□□□□ 0.63
VPS28-208ENST00000527797 SURF4O15260 269 aa19■□□□□ 0.63
VPS28-208ENST00000527797 CLPTM1O96005 669 aa19■□□□□ 0.63
VPS28-208ENST00000527797 TCEA1P23193 301 aaKnown RBP19■□□□□ 0.63
VPS28-208ENST00000527797 GPR85P60893 370 aa19■□□□□ 0.63
VPS28-208ENST00000527797 APOFQ13790 326 aa19■□□□□ 0.63
VPS28-208ENST00000527797 OCLNQ16625 522 aa19■□□□□ 0.63
VPS28-208ENST00000527797 DEFB109BQ30KR1 87 aa19■□□□□ 0.63
VPS28-208ENST00000527797 SLC25A30Q5SVS4 291 aa19■□□□□ 0.63
VPS28-208ENST00000527797 MAMDC2Q7Z304 686 aaPredicted RBP19■□□□□ 0.63
VPS28-208ENST00000527797 ATP6V1C2Q8NEY4 427 aa19■□□□□ 0.63
VPS28-208ENST00000527797 SLC25A36Q96CQ1 311 aa19■□□□□ 0.63
VPS28-208ENST00000527797 FAM173AQ9BQD7 235 aa19■□□□□ 0.63
VPS28-208ENST00000527797 POTEKPQ9BYX7 375 aa19■□□□□ 0.63
VPS28-208ENST00000527797 ZNF552Q9H707 407 aaPredicted RBP19■□□□□ 0.63
VPS28-208ENST00000527797 HIF3AQ9Y2N7 669 aa19■□□□□ 0.63
VPS28-208ENST00000527797 OR5H15A6NDH6 313 aa19■□□□□ 0.63
VPS28-208ENST00000527797 BLOC1S5-TXNDC5H3BN57 136 aa19■□□□□ 0.63
VPS28-208ENST00000527797 TLX3O43711 291 aaPredicted RBP19■□□□□ 0.63
VPS28-208ENST00000527797 EFNA2O43921 213 aa19■□□□□ 0.63
VPS28-208ENST00000527797 TFPIP10646 304 aa19■□□□□ 0.63
VPS28-208ENST00000527797 RPL4P36578 427 aaKnown RBP19■□□□□ 0.63
VPS28-208ENST00000527797 MLLT10P55197 1068 aa19■□□□□ 0.63
VPS28-208ENST00000527797 TUBA4AP68366 448 aa19■□□□□ 0.63
VPS28-208ENST00000527797 TMEM201Q5SNT2 666 aa19■□□□□ 0.63
VPS28-208ENST00000527797 MEDAGQ5VYS4 303 aa19■□□□□ 0.63
VPS28-208ENST00000527797 NANOGNBQ7Z5D8 188 aa19■□□□□ 0.63
VPS28-208ENST00000527797 GTPBP8Q8N3Z3 284 aaPredicted RBP19■□□□□ 0.63
VPS28-208ENST00000527797 ZNF540Q8NDQ6 660 aa19■□□□□ 0.63
VPS28-208ENST00000527797 NDEL1Q9GZM8 345 aa19■□□□□ 0.63
VPS28-208ENST00000527797 RNF32Q9H0A6 362 aa19■□□□□ 0.63
VPS28-208ENST00000527797 BATF3Q9NR55 127 aa19■□□□□ 0.63
VPS28-208ENST00000527797 BOKQ9UMX3 212 aaPredicted RBP19■□□□□ 0.63
VPS28-208ENST00000527797 EFSO43281 561 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 ENTPD6O75354 484 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 PPP1R3DO95685 299 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 IL11P20809 199 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 FKBP2P26885 142 aaKnown RBP18.99■□□□□ 0.63
VPS28-208ENST00000527797 SRD5A2P31213 254 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 FOXK2Q01167 660 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 C3orf33Q6P1S2 294 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 DPY19L2P2Q6ZN68 376 aa18.99■□□□□ 0.63
VPS28-208ENST00000527797 OR5M1Q8NGP8 315 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms