RNA–Protein interactions for RNA: ENST00000515144.5

TRIO-222, Transcript of trio Rho guanine nucleotide exchange factor, human

TSL 1 (best)

Gene TRIO, Length 7,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRIO-222	ENST00000515144	EIF2D	P41214	584 aa	Known RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	SLC10A1	Q14973	349 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	SFRP4	Q6FHJ7	346 aa	Predicted RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	C12orf43	Q96C57	262 aa	Known RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	GLIPR2	Q9H4G4	154 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	ELOVL3	Q9HB03	270 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PCDHGA7	Q9Y5G6	932 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	BLACE	A4D250	179 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	EFS	O43281	561 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	ST6GAL1	P15907	406 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	LIM2	P55344	173 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	RAB15	P59190	212 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	CSNK1G2	P78368	415 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	DCLRE1C	Q96SD1	692 aa	Known RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	MKRN2OS	H3BPM6	223 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	BET1	O15155	118 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	AMY2A	P04746	511 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	GPR157	Q5UAW9	335 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	FAM83H	Q6ZRV2	1179 aa	Predicted RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PHB2	Q99623	299 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	OBP2A	Q9NY56	170 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	USP22	Q9UPT9	525 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PIAS2	O75928	621 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	ARSB	P15848	533 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	BTG2	P78543	158 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	TMEM52B	Q4KMG9	183 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	OR2T11	Q8NH01	316 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	HES7	Q9BYE0	225 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	HMX3	A6NHT5	357 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PCBD1	P61457	104 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	FAP	Q12884	760 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	ZNF404	Q494X3	552 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	SPATS1	Q496A3	300 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	TMEM196	Q5HYL7	178 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PACRGL	Q8N7B6	248 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	KCNE4	Q8WWG9	221 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PLRG1	O43660	514 aa	Known RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	GABBR2	O75899	941 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	CXADR	P78310	365 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	SLC36A2	Q495M3	483 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	EXOSC6	Q5RKV6	272 aa	Known RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	FAM199X	Q6PEV8	388 aa	Predicted RBP	13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	BEST3	Q8N1M1	668 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	PRR7	Q8TB68	274 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	SLC6A20	Q9NP91	592 aa		13.36	□□□□□ -0.27
TRIO-222	ENST00000515144	TOR1A	O14656	332 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	PCDH17	O14917	1159 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	STK17B	O94768	372 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	CALCB	P10092	127 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	NFYB	P25208	207 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	PCGF3	Q3KNV8	242 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SBSN	Q6UWP8	590 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	KIR3DX1	Q9H7L2	352 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	GREB1	Q4ZG55	1949 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	TRBV4-1	A0A0J9YWV2	114 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	LRIT2	A6NDA9	550 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	AQP2	P41181	271 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	PFN3	P60673	137 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	TMEM207	Q6UWW9	146 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	CD163	Q86VB7	1156 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	ENDOV	Q8N8Q3	282 aa	Known RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	THRSP	Q92748	146 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	MGAT4C	Q9UBM8	478 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	NXT1	Q9UKK6	140 aa	Known RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	TMEM269	A0A1B0GVZ9	245 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	MBTPS2	O43462	519 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	NCR1	O76036	304 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	HEXA	P06865	529 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	GABRG2	P18507	467 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SCML4	Q8N228	414 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	FBXO27	Q8NI29	283 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	TMED7-TICAM2	A0A0A6YYA0	188 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SNN	O75324	88 aa	Predicted RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	OR2J2	O76002	312 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	PRRC1	Q96M27	445 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	MICU1	Q9BPX6	476 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	EIF5A2	Q9GZV4	153 aa	Known RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	PLA2G3	Q9NZ20	509 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SLC23A2	Q9UGH3	650 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	WDR37	Q9Y2I8	494 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	TMED7	Q9Y3B3	224 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	HCRTR1	O43613	425 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	DRD5	P21918	477 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	LCN1	P31025	176 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	MEPE	Q9NQ76	525 aa	Predicted RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	KLHL42	Q9P2K6	505 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	RPH3AL	Q9UNE2	315 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	LSM5	Q9Y4Y9	91 aa	Known RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	MAGED1	Q9Y5V3	778 aa	Predicted RBP	13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	NUDT7	P0C024	238 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SELPLG	Q14242	412 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	LILRA2	Q8N149	483 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SYNPR	Q8TBG9	265 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	SLC38A5	Q8WUX1	472 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	UFSP2	Q9NUQ7	469 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	TRAPPC2L	Q9UL33	140 aa		13.35	□□□□□ -0.27
TRIO-222	ENST00000515144	IDS	B3KWA1	339 aa		13.34	□□□□□ -0.27
TRIO-222	ENST00000515144	STMND1	H3BQB6	276 aa		13.34	□□□□□ -0.27
TRIO-222	ENST00000515144	IFNA17	P01571	189 aa		13.34	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms