RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 RNF44Q7L0R7 432 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 TRILQ7L0X0 811 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 OR4K13Q8NH42 304 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ZNF671Q8TAW3 534 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 KISS1RQ969F8 398 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 CACNG6Q9BXT2 260 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 SPATA2Q9UM82 520 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 CFDP00746 253 aaPredicted RBP15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 HPXP02790 462 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 BMP8BP34820 402 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 AMZ1Q400G9 498 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ACSM3Q53FZ2 586 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 MEPCEQ7L2J0 689 aaKnown RBP15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 BMP8AQ7Z5Y6 402 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 PLCZ1Q86YW0 608 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 GATSQ8NAP1 163 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ABHD4Q8TB40 342 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 GIMAP1Q8WWP7 306 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 LMF1Q96S06 567 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 KCNJ15Q99712 375 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 GAL3ST1Q99999 423 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 OR10A4Q9H209 315 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 POT1Q9NUX5 634 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 ZNF224Q9NZL3 707 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 SIGLEC7Q9Y286 467 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 MED31Q9Y3C7 131 aa15.2■□□□□ 0.02
CCDC88B-210ENST00000494566 MAOAP21397 527 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC6A1P30531 599 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 FZD2Q14332 565 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 OR5M3Q8NGP4 307 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 THAP4Q8WY91 577 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 SLCO1C1Q9NYB5 712 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 ZMIZ1Q9ULJ6 1067 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 PRR23D1E9PI22 279 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 TCRBP04435 133 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 WNT1P04628 370 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 PROS1P07225 676 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 PRR23D2P0DMB1 279 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 ATF1P18846 271 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 STOMP27105 288 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 ST3GAL2Q16842 350 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 BRIX1Q8TDN6 353 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 OR14A2Q96R54 314 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 SEMA4CQ9C0C4 833 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 OR51J1Q9H342 316 aa15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 KRCC1Q9NPI7 259 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-210ENST00000494566 OR5K3A6NET4 321 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 C2CD4DB7Z1M9 353 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 J3QRE1 110 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 AHCYP23526 432 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 THBS2P35442 1172 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 YPEL5P62699 121 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 MRPS21P82921 87 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 TNK1Q13470 666 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 LINGO2Q7L985 606 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 KANSL1Q7Z3B3 1105 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 OAFQ86UD1 273 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 TEAD3Q99594 435 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 ZFP64Q9NPA5 681 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 ADAM30Q9UKF2 790 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 ING4Q9UNL4 249 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 A0A087WV62 115 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 ACOD1A6NK06 481 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 NUPL2O15504 423 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 DHFRP00374 187 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 MAOBP27338 520 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 PLA1AQ53H76 456 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 TMEM255AQ5JRV8 349 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 OOSP2Q86WS3 158 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 CDK20Q8IZL9 346 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 ZNF680Q8NEM1 530 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 ZDHHC1Q8WTX9 485 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 CTHRC1Q96CG8 243 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 MAP3K3Q99759 626 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 FOLH1BQ9HBA9 442 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 TMEM27Q9HBJ8 222 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 MED17Q9NVC6 651 aa15.18■□□□□ 0.02
CCDC88B-210ENST00000494566 SHISA7A6NL88 538 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 SEC14L5O43304 696 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 GMDSO60547 372 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 RPP14O95059 124 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 MAP3K8P41279 467 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 RPS27P42677 84 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 SELENOPP49908 381 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 UBE2MP61081 183 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 STX4Q12846 297 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 ALG10BQ5I7T1 473 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 EXOSC6Q5RKV6 272 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 ARMC6Q6NXE6 501 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 LNX2Q8N448 690 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 SLC44A3Q8N4M1 653 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 OR8K3Q8NH51 312 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 KIAA1143Q96AT1 154 aaPredicted RBP15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 STACQ99469 402 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 TRIM36Q9NQ86 728 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 NANSQ9NR45 359 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 LRIT1Q9P2V4 623 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 SATB2Q9UPW6 733 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 ADAM18Q9Y3Q7 739 aa15.17■□□□□ 0.02
CCDC88B-210ENST00000494566 ABCA7Q8IZY2 2146 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms