RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 UBQLN4Q9NRR5 601 aa11.12□□□□□ -0.63
HDAC6-230ENST00000488543 IL20Q9NYY1 176 aa11.12□□□□□ -0.63
HDAC6-230ENST00000488543 V9GYH0 126 aa11.12□□□□□ -0.63
HDAC6-230ENST00000488543 LOC400499M0QZD8 3231 aa11.12□□□□□ -0.63
HDAC6-230ENST00000488543 LAMA5O15230 3695 aa11.12□□□□□ -0.63
HDAC6-230ENST00000488543 SYNDIG1LA6NDD5 238 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 OR6C76A6NM76 312 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 DLL1O00548 723 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 TSPAN2O60636 221 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SCG5P05408 212 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 FUT1P19526 365 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SMSP52788 366 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 FXYD6P3P58550 94 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 OCLNQ16625 522 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 LINC00114Q6XXX2 140 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 C16orf47Q6ZP98 133 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 GLCCI1Q86VQ1 547 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 FAM26EQ8N5C1 309 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 CLDN22Q8N7P3 220 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 TMEM80Q96HE8 168 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SLC26A1Q9H2B4 701 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 NEK6Q9HC98 313 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 ATP13A2Q9NQ11 1180 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 CNOT2Q9NZN8 540 aaKnown RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 MALT1Q9UDY8 824 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SLC35A3Q9Y2D2 325 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 UGT2A1Q9Y4X1 527 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 CDH10Q9Y6N8 788 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SDK2Q58EX2 2172 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 CCDC187A0A096LP49 1063 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 A0A1W2PQ09 198 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 TM4SF5O14894 197 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SNX4O95219 450 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 UMODP07911 640 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 NGFRP08138 427 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 IFI30P13284 250 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 TBXA2RP21731 343 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 NR0B1P51843 470 aaKnown RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 CTBP2P56545 445 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 RPS18P62269 152 aaKnown RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 HNRNPA0Q13151 305 aaKnown RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 INSL4Q14641 139 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SLC25A30Q5SVS4 291 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 ATAD3CQ5T2N8 411 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SLC27A4Q6P1M0 643 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 GATSQ8NAP1 163 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 C9orf43Q8TAL5 461 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 ZNF486Q96H40 463 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 LRFN5Q96NI6 719 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 ADOQ96SZ5 270 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 TM9SF2Q99805 663 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 WDR77Q9BQA1 342 aaPredicted RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 DPH1Q9BZG8 443 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 SEMA4CQ9C0C4 833 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 RACGAP1Q9H0H5 632 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 ABCB9Q9NP78 766 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 COPS7AQ9UBW8 275 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 IL20RAQ9UHF4 553 aa11.11□□□□□ -0.63
HDAC6-230ENST00000488543 PTRH2Q9Y3E5 179 aaKnown RBP11.11□□□□□ -0.63
HDAC6-230ENST00000488543 UNC119BA6NIH7 251 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 PROB1E7EW31 1015 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 MASP2O00187 686 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 ICOSLGO75144 302 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 CH25HO95992 272 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 RPS25P62851 125 aaKnown RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 SKP2Q13309 424 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 BCL2A1Q16548 175 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 CLEC12AQ5QGZ9 265 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 TMPRSS11FQ6ZWK6 438 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 SLC29A4Q7RTT9 530 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 OR52I1Q8NGK6 324 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 THAP3Q8WTV1 239 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 METTL21AQ8WXB1 218 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 OSTF1Q92882 214 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 LRR1Q96L50 414 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 RTN4RQ9BZR6 473 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 SPRY4Q9C004 299 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 DDX28Q9NUL7 540 aaKnown RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 GPN3Q9UHW5 284 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 PADI1Q9ULC6 663 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 PPIEQ9UNP9 301 aaKnown RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 MED31Q9Y3C7 131 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 SPIN1Q9Y657 262 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 A3GALT2U3KPV4 340 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 REM1O75628 298 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 DKK1O94907 266 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 TNFSF15O95150 251 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 PIPP12273 146 aaPredicted RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 LCN1P31025 176 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 RBM34P42696 430 aaKnown RBP11.1□□□□□ -0.63
HDAC6-230ENST00000488543 NHLH1Q02575 133 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 NCF4Q15080 339 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 SYT14P1Q58G82 188 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 ALG10BQ5I7T1 473 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 AGAP6Q5VW22 663 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 HLA-DQA1Q5Y7H0 255 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 PHC2Q8IXK0 858 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 ZNF440Q8IYI8 595 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 CADM2Q8N3J6 435 aa11.1□□□□□ -0.63
HDAC6-230ENST00000488543 APCDD1LQ8NCL9 501 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms