RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 EMC3Q9P0I2 261 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 MALT1Q9UDY8 824 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 FLVCR1Q9Y5Y0 555 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 TLN2Q9Y4G6 2542 aa12.43□□□□□ -0.42
UPF3A-204ENST00000475218 A0A096LPI6 279 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 LIPT2A6NK58 231 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 OR5H1A6NKK0 313 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 SHISA9B4DS77 424 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 CLIC1O00299 241 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 CLOCKO15516 846 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 TGDSO95455 350 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 ANP32DO95626 131 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 PPA1Q15181 289 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 STK11Q15831 433 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 PGGHGQ32M88 737 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 LIN52Q52LA3 116 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 TIMM23BQ5SRD1 257 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 LRIF1Q5T3J3 769 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 OR52E4Q8NGH9 312 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 APH1AQ96BI3 265 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 IKZF5Q9H5V7 419 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 A4GALTQ9NPC4 353 aa12.42□□□□□ -0.42
UPF3A-204ENST00000475218 TMEM229AB2RXF0 380 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 FRS3O43559 492 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 NPIPB7O75200 414 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 LY6G6DO95868 133 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 GGT1P19440 569 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 SLC35A1P78382 337 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 HOXC5Q00444 222 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CEACAM7Q14002 265 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 GNA13Q14344 377 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF672Q499Z4 452 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-204ENST00000475218 PAQR6Q6TCH4 344 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF440Q8IYI8 595 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 TMEM99Q8N816 258 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 TMEM171Q8WVE6 324 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 DDIT4LQ96D03 193 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 ZHX1-C8orf76Q96EF9 292 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 USB1Q9BQ65 265 aaKnown RBP12.41□□□□□ -0.42
UPF3A-204ENST00000475218 SPATA9Q9BWV2 254 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 ESRP2Q9H6T0 727 aaKnown RBP12.41□□□□□ -0.42
UPF3A-204ENST00000475218 BCL2L10Q9HD36 194 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 SLC7A10Q9NS82 523 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CALML5Q9NZT1 146 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 VAPAQ9P0L0 249 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 LAMP3Q9UQV4 416 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 MAGED1Q9Y5V3 778 aaPredicted RBP12.41□□□□□ -0.42
UPF3A-204ENST00000475218 SLC25A15Q9Y619 301 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 GMEB1Q9Y692 573 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 A0A0G2JPF8 293 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 HNRNPCL2B2RXH8 293 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 HNRNPCL3B7ZW38 293 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 GPR171O14626 319 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 HNRNPCL1O60812 293 aaKnown RBP12.41□□□□□ -0.42
UPF3A-204ENST00000475218 RAD51DO75771 328 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 AKR7A3O95154 331 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CD8AP01732 235 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CD3EP07766 207 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 HNRNPCL4P0DMR1 293 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 MAP2K6P52564 334 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 SLC25A3Q00325 362 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 LTBQ06643 244 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 SPOCK1Q08629 439 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 FAPQ12884 760 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 GABRA6Q16445 453 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 WBP2NLQ6ICG8 309 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CADM2Q8N3J6 435 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 WDR31Q8NA23 367 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 LRRC8CQ8TDW0 803 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 C3orf49Q96BT1 292 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 MUS81Q96NY9 551 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF385AQ96PM9 386 aaKnown RBP12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CCDC28BQ9BUN5 200 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 AMBRA1Q9C0C7 1298 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 CCDC167Q9P0B6 97 aa12.41□□□□□ -0.42
UPF3A-204ENST00000475218 PLCE1Q9P212 2302 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 A0A1W2PR80 420 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 POLR3GO15318 223 aaPredicted RBP12.4□□□□□ -0.42
UPF3A-204ENST00000475218 EIF1BO60739 113 aaKnown RBP12.4□□□□□ -0.42
UPF3A-204ENST00000475218 MRPL33O75394 65 aaKnown RBP12.4□□□□□ -0.42
UPF3A-204ENST00000475218 IDUAP35475 653 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 AQP5P55064 265 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 EGR4Q05215 589 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 TSPO2Q5TGU0 170 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 HDXQ7Z353 690 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 UBE2J2Q8N2K1 259 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 OR52N5Q8NH56 324 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 FBXW5Q969U6 566 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 SPDL1Q96EA4 605 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 PTDSS2Q9BVG9 487 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 ZNF385DQ9H6B1 395 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 ASB6Q9NWX5 421 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 CSPG4Q6UVK1 2322 aa12.4□□□□□ -0.42
UPF3A-204ENST00000475218 AQP7P3A6NL99 342 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 FTCDNL1E5RQL4 147 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 NR5A2O00482 541 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 HEXAP06865 529 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 ARAFP10398 606 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 FADDQ13158 208 aa12.39□□□□□ -0.43
UPF3A-204ENST00000475218 OR7A5Q15622 319 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms