RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 ANKRD26P1Q6NSI1 321 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 LEG1Q6P5S2 330 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 LRIG3Q6UXM1 1119 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 ZNF771Q7L3S4 317 aaPredicted RBP4.53□□□□□ -1.68
PTPN4-209ENST00000469511 SPATA21Q7Z572 469 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 C1QL2Q7Z5L3 287 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 ZBED8Q8IZ13 594 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 TOR1AIP2Q8NFQ8 470 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 CDC26Q8NHZ8 85 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 APH1AQ96BI3 265 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 ERP27Q96DN0 273 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 ARL5BQ96KC2 179 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 EGLN2Q96KS0 407 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 AMDHD1Q96NU7 426 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 BBS4Q96RK4 519 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 CPNE1Q99829 537 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 ACPTQ9BZG2 426 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 RAB1BQ9H0U4 201 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 ELOVL6Q9H5J4 265 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 CNTD2Q9H8S5 307 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 MYOZ1Q9NP98 299 aaPredicted RBP4.53□□□□□ -1.68
PTPN4-209ENST00000469511 TIGARQ9NQ88 270 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 DDX28Q9NUL7 540 aaKnown RBP4.53□□□□□ -1.68
PTPN4-209ENST00000469511 MED29Q9NX70 200 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 TAS2R16Q9NYV7 291 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 SENP1Q9P0U3 644 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 MALT1Q9UDY8 824 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 NOSIPQ9Y314 301 aaKnown RBP4.53□□□□□ -1.68
PTPN4-209ENST00000469511 GRIP1Q9Y3R0 1128 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 NOTCH3Q9UM47 2321 aa4.53□□□□□ -1.68
PTPN4-209ENST00000469511 IGKV3D-15A0A087WSY6 115 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 CENPVL1A0A0U1RR11 272 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 GNG14A0A1W2PPG7 69 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 MANBAO00462 879 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 BCAS1O75363 584 aaPredicted RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 NCR1O76036 304 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 PRSS23O95084 383 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 MPIG6BO95866 241 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 BCL10O95999 233 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 PNPP00491 289 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 NGFRP08138 427 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 PRTN3P24158 256 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 SLC7A1P30825 629 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 MPIP34949 423 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 GPR6P46095 362 aaPredicted RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 P2RX1P51575 399 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 ARL4CP56559 192 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 NAAAQ02083 359 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 HSPB3Q12988 150 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 MAD2L1BPQ15013 274 aaPredicted RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 QPRTQ15274 297 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 TIGD2Q4W5G0 525 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF385BQ569K4 471 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 AVPI1Q5T686 147 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 FAM71E1Q6IPT2 247 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 ANKRD16Q6P6B7 361 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 CD300LDQ6UXZ3 194 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 Q6ZPA2 131 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 TMPPEQ6ZT21 453 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 LINGO2Q7L985 606 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 LRP11Q86VZ4 500 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 CTAGE3PQ8IX95 158 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 KLHL7Q8IXQ5 586 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 KIR3DL3Q8N743 410 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 ZIC4Q8N9L1 334 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 TRIM58Q8NG06 486 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 RHEBL1Q8TAI7 183 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 NEU4Q8WWR8 484 aaPredicted RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 CIDECQ96AQ7 238 aaPredicted RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 LRRC39Q96DD0 335 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 SLC38A2Q96QD8 506 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 KCNA7Q96RP8 456 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 FOXB1Q99853 325 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 SUCNR1Q9BXA5 334 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 OR11A1Q9GZK7 315 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 NELFAQ9H3P2 528 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF275Q9NSD4 429 aaPredicted RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 DDX18Q9NVP1 670 aaKnown RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 C14orf119Q9NWQ9 140 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 SIRT5Q9NXA8 310 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 MYEF2Q9P2K5 600 aaKnown RBP4.52□□□□□ -1.69
PTPN4-209ENST00000469511 VPS29Q9UBQ0 182 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 ZNF69Q9UC07 566 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 KCNE5Q9UJ90 142 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 SNX24Q9Y343 169 aa4.52□□□□□ -1.69
PTPN4-209ENST00000469511 A0A096LPK6 155 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 A0A1W2PQD3 144 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 SULT2B1O00204 365 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 PGRMC1O00264 195 aaKnown RBP4.51□□□□□ -1.69
PTPN4-209ENST00000469511 MRPL33O75394 65 aaKnown RBP4.51□□□□□ -1.69
PTPN4-209ENST00000469511 SEC31AO94979 1220 aaKnown RBP4.51□□□□□ -1.69
PTPN4-209ENST00000469511 KLHL2O95198 593 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 MPZL1O95297 269 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 TSPAN15O95858 294 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 LGI1O95970 557 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 RPS17P08708 135 aaKnown RBP4.51□□□□□ -1.69
PTPN4-209ENST00000469511 ANXA4P09525 319 aaPredicted RBP4.51□□□□□ -1.69
PTPN4-209ENST00000469511 SAGP10523 405 aaPredicted RBP4.51□□□□□ -1.69
PTPN4-209ENST00000469511 PRPS2P11908 318 aa4.51□□□□□ -1.69
PTPN4-209ENST00000469511 DDX5P17844 614 aaKnown RBP4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms