RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 DCAF13Q9NV06 445 aaKnown RBP3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 KLHL28Q9NXS3 571 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 RHCGQ9UBD6 479 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 NKX1-2Q9UD57 310 aaPredicted RBP3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 ANGPTL2Q9UKU9 493 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 BAG5Q9UL15 447 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 SAMD4AQ9UPU9 718 aaKnown RBP3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 ZNF443Q9Y2A4 671 aaPredicted RBP3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 IFT52Q9Y366 437 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 FAM32AQ9Y421 112 aaKnown RBP3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 GMEB1Q9Y692 573 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 VPS13AQ96RL7 3174 aa3.72□□□□□ -1.81
TMEM39A-204ENST00000468545 NUP210LQ5VU65 1888 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TCRBV3S1A0A5B6 114 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 SERINC4A6NH21 518 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 AGAP5A6NIR3 686 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 SAC3D1A6NKF1 404 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CPSF4LA6NMK7 179 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 C17orf51A8MQB3 221 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 H3BNH8 94 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 J3KTA2 159 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 AP3D1O14617 1153 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TP53I11O14683 189 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TO15178 435 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ACOX3O15254 700 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 MPPED1O15442 326 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 HNRNPRO43390 633 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 AKAP8O43823 692 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 KIAA0513O60268 411 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CDC40O60508 579 aaKnown RBP eCLIP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TSPAN2O60636 221 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TPST2O60704 377 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ICOSLGO75144 302 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 BCAS1O75363 584 aaPredicted RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OR6B1O95007 311 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 INMTO95050 263 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 NADKO95544 446 aaPredicted RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ATP6V1G2O95670 118 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OXSR1O95747 527 aaPredicted RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 NUDT14O95848 222 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CST1P01037 141 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CSTAP01040 98 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 FSHBP01225 129 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 FABP3P05413 133 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 GPIP06744 558 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ANXA2P07355 339 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 UBTFL6P0CB48 400 aaPredicted RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ETS2P15036 469 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ANPEPP15144 967 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CCNA2P20248 432 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 FASP25445 335 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ACVR2AP27037 513 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ITPKBP27987 946 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CCR4P51679 360 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 PNLIPRP2P54317 469 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 RGS8P57771 180 aaPredicted RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 KCNJ10P78508 379 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 IL1RL1Q01638 556 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CDC20Q12834 499 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 AIMP2Q13155 320 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 EFR3AQ14156 821 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 GANABQ14697 944 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 LRRC36Q1X8D7 754 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 NDUFAF6Q330K2 333 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ZIK1Q3SY52 487 aaPredicted RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 LIN52Q52LA3 116 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 MTX3Q5HYI7 312 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ACER2Q5QJU3 275 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 MRPL2Q5T653 305 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 PRAMEF20Q5VT98 475 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 PRAMEF8Q5VWM4 474 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 PRAMEF7Q5VXH5 474 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 SPINK14Q6IE38 97 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 AAGABQ6PD74 315 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OPN5Q6U736 354 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 APOOLQ6UXV4 268 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 NUP54Q7Z3B4 507 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 COMTD1Q86VU5 262 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 LACC1Q8IV20 430 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 LIX1LQ8IVB5 337 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ZDHHC21Q8IVQ6 265 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 BEST3Q8N1M1 668 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CADM2Q8N3J6 435 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 GALNT16Q8N428 558 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TMCO5AQ8N6Q1 288 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 RNF152Q8N8N0 203 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ZNF441Q8N8Z8 693 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TOR1AIP2Q8NFQ8 470 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 GPR32P1Q8NGA4 272 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OR10G3Q8NGC4 313 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OR4D11Q8NGI4 311 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OR8K3Q8NH51 312 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 OR52J3Q8NH60 311 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 ZNF563Q8TA94 476 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 DUSP19Q8WTR2 217 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 RASSF5Q8WWW0 418 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 THAP4Q8WY91 577 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 CNOT9Q92600 299 aaKnown RBP3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 SLCO4A1Q96BD0 722 aa3.71□□□□□ -1.82
TMEM39A-204ENST00000468545 TMCO6Q96DC7 493 aa3.71□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms