RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 ERVW-1Q9UQF0 538 aa4.51□□□□□ -1.69
USP54-206ENST00000433394 RALGAPA1Q6GYQ0 2036 aa4.51□□□□□ -1.69
USP54-206ENST00000433394 CCNB3Q8WWL7 1395 aa4.51□□□□□ -1.69
USP54-206ENST00000433394 ATP10BO94823 1461 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 MYOM3Q5VTT5 1437 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 XKRY2A2RUG3 117 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 ARHGEF35A5YM69 484 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 NDUFB10O96000 172 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 IGHG4P01861 327 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 PSMB1P20618 241 aaKnown RBP4.5□□□□□ -1.69
USP54-206ENST00000433394 HTR1FP30939 366 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 CRYBB1P53674 252 aaPredicted RBP4.5□□□□□ -1.69
USP54-206ENST00000433394 SEC61GP60059 68 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 KLRB1Q12918 225 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 CTSL3PQ5NE16 218 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 ZNF774Q6NX45 483 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 PAMR1Q6UXH9 720 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 CDH26Q8IXH8 852 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 GPR137CQ8N3F9 429 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 CD177Q8N6Q3 437 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 OR9K2Q8NGE7 335 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 NT5C3BQ969T7 300 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 HAVCR1Q96D42 359 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 SLC25A38Q96DW6 304 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 DEFB126Q9BYW3 111 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 EHD1Q9H4M9 534 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 BTNL2Q9UIR0 455 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 IKZF2Q9UKS7 526 aa4.5□□□□□ -1.69
USP54-206ENST00000433394 NCOA2Q15596 1464 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 PLEKHH2Q8IVE3 1493 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 FGD6Q6ZV73 1430 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 CTAGE15A4D2H0 777 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 NBR2O15453 112 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 LATO43561 262 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 PRKAB2O43741 272 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 TROVE2P10155 538 aaKnown RBP eCLIP4.49□□□□□ -1.69
USP54-206ENST00000433394 IGLL1P15814 213 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 NCK1P16333 377 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 DUSP3P51452 185 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 RPS8P62241 208 aaKnown RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 UTF1Q5T230 341 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 OR2A2Q6IF42 318 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 H2BFWTQ7Z2G1 175 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 HSD17B13Q7Z5P4 300 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 CTAGE6Q86UF2 777 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 ZNF589Q86UQ0 364 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 FTMTQ8N4E7 242 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 OR56B2PQ8NGI1 322 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 OR1L4Q8NGR5 311 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 MAGEE2Q8TD90 523 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 ANKRD9Q96BM1 317 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 B3GALT6Q96L58 329 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 MAGEB18Q96M61 343 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 NOL4LQ96MY1 436 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 MAPKAP1Q9BPZ7 522 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 CCDC77Q9BR77 488 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 ZNF670Q9BS34 389 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 NICN1Q9BSH3 213 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 ROPN1BQ9BZX4 212 aaPredicted RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 YY1AP1Q9H869 796 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 SLC2A8Q9NY64 477 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 UBQLN1Q9UMX0 589 aaKnown RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 VSIG4Q9Y279 399 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 IFT52Q9Y366 437 aa4.49□□□□□ -1.69
USP54-206ENST00000433394 TCOF1Q13428 1488 aaKnown RBP4.49□□□□□ -1.69
USP54-206ENST00000433394 SH3TC1Q8TE82 1336 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 AKNAQ7Z591 1439 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 MAPKBP1O60336 1514 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 ZCCHC11Q5TAX3 1644 aaKnown RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 BTBD17A6NE02 478 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 VSTM2BA6NLU5 285 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 ZNF705EA8MWA4 302 aaPredicted RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 RAMP3O60896 148 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 OXSR1O95747 527 aaPredicted RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 SEMG1P04279 462 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 MCF2P10911 925 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 TNNI1P19237 187 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 FASP25445 335 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 GDI1P31150 447 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 DEKP35659 375 aaKnown RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 MRPL28Q13084 256 aaKnown RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 PLD1Q13393 1074 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 ARFRP1Q13795 201 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 KYAT1Q16773 422 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 PRR30Q53SZ7 412 aaPredicted RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 C6orf226Q5I0X4 101 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 EOGTQ5NDL2 527 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 C1orf220Q5T0J3 134 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 ACOT7LQ6ZUV0 252 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 TMEM179BQ7Z7N9 219 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 VRK2Q86Y07 508 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 SLC22A9Q8IVM8 553 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 SLC2A14Q8TDB8 520 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 PAQR8Q8TEZ7 354 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 DNAJA4Q8WW22 397 aaPredicted RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 NUS1Q96E22 293 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 CNDP1Q96KN2 507 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 ZNF641Q96N77 438 aaPredicted RBP4.48□□□□□ -1.69
USP54-206ENST00000433394 RNF2Q99496 336 aa4.48□□□□□ -1.69
USP54-206ENST00000433394 HIST1H4GQ99525 98 aa4.48□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms