RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 BRD7Q9NPI1 651 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 MKKSQ9NPJ1 570 aaPredicted RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 DNAJB12Q9NXW2 375 aaKnown RBP10.4□□□□□ -0.74
USP4-205ENST00000431357 RPS6KB2Q9UBS0 482 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 FBXL4Q9UKA2 621 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 MGAT4AQ9UM21 535 aa10.4□□□□□ -0.74
USP4-205ENST00000431357 C2orf16Q68DN1 1984 aa10.4□□□□□ -0.75
USP4-205ENST00000431357 TRBV23OR9-2A0A075B6M9 112 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 PPM1BO75688 479 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 GYPBP06028 91 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 CD3GP09693 182 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SNRPBP14678 240 aaKnown RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 GIFP27352 417 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 GPR143P51810 404 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 PSMD4P55036 377 aaKnown RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 PER3P56645 1201 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ILF3Q12906 894 aaKnown RBP eCLIP10.39□□□□□ -0.75
USP4-205ENST00000431357 FHL1Q13642 323 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ISXQ2M1V0 245 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 COL28A1Q2UY09 1125 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ESCO2Q56NI9 601 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 TMEM196Q5HYL7 178 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 CLVS2Q5SYC1 327 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 FAM69AQ5T7M9 428 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 TMEM52Q8NDY8 209 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 OR52R1Q8NGF1 315 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 OR8H1Q8NGG4 311 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 OR14A16Q8NHC5 309 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 DOK4Q8TEW6 326 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SNX33Q8WV41 574 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SMIM4Q8WVI0 70 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 FAM3CQ92520 227 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 TSACCQ96A04 125 aaPredicted RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 ELSPBP1Q96BH3 223 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SGTBQ96EQ0 304 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ZFP3Q96NJ6 502 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 NECTIN4Q96NY8 510 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 MRI1Q9BV20 369 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ZFP64Q9NPA5 681 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SLCO1C1Q9NYB5 712 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SLC23A1Q9UHI7 598 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ELF5Q9UKW6 265 aaPredicted RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 MRPS2Q9Y399 296 aaKnown RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 SCN3AQ9NY46 2000 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 MEIKINA0A087WXM9 373 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 A0A0J9YY10 115 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SYNDIG1LA6NDD5 238 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 TRABD2BA6NFA1 517 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 RASGRP1O95267 797 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ECDO95905 644 aaPredicted RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 CBX7O95931 251 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 TFP02787 698 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 TPOP07202 933 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 DIO1P49895 249 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 DGCR2P98153 550 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 SNTB2Q13425 540 aaKnown RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 KLF9Q13886 244 aaPredicted RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 GPR18Q14330 331 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 GSG1Q2KHT4 349 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 DPY19L2P2Q6ZN68 376 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 EID2Q8N6I1 236 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ZNF614Q8N883 585 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 OR13C5Q8NGS8 318 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 CCL4L1Q8NHW4 92 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 RPLP0P6Q8NHW5 317 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ZNF671Q8TAW3 534 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 ANKRD9Q96BM1 317 aaPredicted RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 ZMYND19Q96E35 227 aaPredicted RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 RADILQ96JH8 1075 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 PTCHD1Q96NR3 888 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 CITED4Q96RK1 184 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 KXD1Q9BQD3 176 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 GSDMCQ9BYG8 508 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 PLEKHA1Q9HB21 404 aa10.39□□□□□ -0.75
USP4-205ENST00000431357 MRPS7Q9Y2R9 242 aaKnown RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 PCDHGA9Q9Y5G4 932 aaKnown RBP10.39□□□□□ -0.75
USP4-205ENST00000431357 TRBV2A0A0J9YWF9 115 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 NAP1L6A6NFF2 107 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 ARPC3O15145 178 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 OR10H2O60403 315 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 PRAF2O60831 178 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 SULT1A3P0DMM9 295 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 SULT1A4P0DMN0 295 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 MYOGP15173 224 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 HIST1H1CP16403 213 aaKnown RBP10.38□□□□□ -0.75
USP4-205ENST00000431357 EDNRAP25101 427 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 EMDP50402 254 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 RPS11P62280 158 aaKnown RBP eCLIP10.38□□□□□ -0.75
USP4-205ENST00000431357 IL10RAQ13651 578 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 FGFBP1Q14512 234 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 ZNF141Q15928 474 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 LYPD8Q6UX82 237 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 PRSS41Q7RTY9 318 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 ZAR1Q86SH2 424 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 TMEFF1Q8IYR6 380 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 CSNK1A1LQ8N752 337 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 SDR9C7Q8NEX9 313 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 OR4K13Q8NH42 304 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 BMFQ96LC9 184 aa10.38□□□□□ -0.75
USP4-205ENST00000431357 SLC6A17Q9H1V8 727 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms