RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 SIRPAP78324 504 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PRSS48Q7RTY5 328 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 IRF2BP1Q8IU81 584 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CMTM4Q8IZR5 234 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 C1orf87Q8N0U7 546 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 FBXL20Q96IG2 436 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PAQR5Q9NXK6 330 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 MRPL15Q9P015 296 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 AGAP14A8MT82 685 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 TPOP07202 933 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 RAB40ALP0C0E4 278 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 NDUFA6P56556 154 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SLC35A2P78381 396 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 FLI1Q01543 452 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 BAXQ07812 192 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 LAPTM4AQ15012 233 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 MLF2Q15773 248 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CPXM2Q8N436 756 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PLEKHO2Q8TD55 490 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 RAB40AQ8WXH6 277 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 BIRC8Q96P09 236 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 C1QTNF2Q9BXJ5 285 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 USP36Q9P275 1121 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 MED16Q9Y2X0 877 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 RAB19A4D1S5 217 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 LDB3O75112 727 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 APOC3P02656 99 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 HIST1H1TP22492 207 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 AADACP22760 399 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 MBTPS1Q14703 1052 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF718Q3SXZ3 478 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 BLOC1S3Q6QNY0 202 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 GDPGP1Q6ZNW5 385 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 IDO2Q6ZQW0 420 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 Q6ZRG5 221 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 TCEAL8Q8IYN2 117 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CNIH3Q8TBE1 160 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 IGSF8Q969P0 613 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 TPPP3Q9BW30 176 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SCPEP1Q9HB40 452 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 DUSP13Q9UII6 198 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 A0A0D9SG52 128 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF814B7Z6K7 855 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ABCD4O14678 606 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 POU2F2P09086 479 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ITGB8P26012 769 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SELENOWP63302 87 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PROX2Q3B8N5 592 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 METTL4Q8N3J2 472 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 BTNL2Q9UIR0 455 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ATP23Q9Y6H3 246 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 V9GY05 133 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 PRRC2BQ5JSZ5 2229 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CD70P32970 193 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 HOXD12P35452 270 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 AGFG1P52594 562 aaKnown RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 GNB1P62873 340 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 KCNAB2Q13303 367 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF439Q8NDP4 499 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 OR52E1Q8NGJ3 308 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 OR5AR1Q8NGP9 310 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 FGF13Q92913 245 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 CPPED1Q9BRF8 314 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 BOCQ9BWV1 1114 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SAV1Q9H4B6 383 aaPredicted RBP6.41□□□□□ -1.38
SCN1A-204ENST00000423058 SAGE1Q9NXZ1 904 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 OBP2AQ9NY56 170 aa6.41□□□□□ -1.38
SCN1A-204ENST00000423058 A0A0A6YYC8 382 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM269A0A1B0GVZ9 245 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 WTIPA6NIX2 430 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 KDM4EB2RXH2 506 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 I3L1I5 382 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 BET1O15155 118 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 NFYBP25208 207 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 CLDN2P57739 230 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 POU3F1Q03052 451 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 OR8G1Q15617 311 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM176BQ3YBM2 270 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF322Q6U7Q0 402 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 SYT13Q7L8C5 426 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 OVCH1Q7RTY7 1134 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 SERPINA12Q8IW75 414 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 MFSD6LQ8IWD5 586 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ZNF454Q8N9F8 522 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 LGALS12Q96DT0 336 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ELMOD3Q96FG2 381 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 CNTNAP3Q9BZ76 1288 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 WASH6PQ9NQA3 447 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 FAM212BQ9NTI7 297 aaPredicted RBP6.4□□□□□ -1.38
SCN1A-204ENST00000423058 PTTG3PQ9NZH4 202 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ITGB4P16144 1822 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 TMEM221A6NGB7 291 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 OR6C65A6NJZ3 312 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 HSPB6O14558 160 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 CLIC3O95833 236 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 F3P13726 295 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 ARSAP15289 507 aa6.4□□□□□ -1.38
SCN1A-204ENST00000423058 NDUFB7P17568 137 aa6.4□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms