RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 SECISBP2Q96T21 854 aaKnown RBP16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 MESP1Q9BRJ9 268 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 OR51E2Q9H255 320 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF160Q9HCG1 818 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 KLRF1Q9NZS2 232 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 CRNNQ9UBG3 495 aaPredicted RBP16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 DAPK2Q9UIK4 370 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 WDR87Q6ZQQ6 2873 aa16.6■□□□□ 0.25
CCDC88C-203ENST00000389856 LOC100506127A0A0U1RQW1 187 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 PMS2P1A4D2B8 440 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 MYL12BO14950 172 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 MAGEB3O15480 346 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 TLX2O43763 284 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 PIP5K1CO60331 668 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ADAM11O75078 769 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 PSMA1P25786 263 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ETV6P41212 452 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 SLC9A3P48764 834 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 BCAP31P51572 246 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 SNAPC1Q16533 368 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 CBLN3Q6UW01 205 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 WDR88Q6ZMY6 472 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 OR2T33Q8NG76 320 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 FANK1Q8TC84 345 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 RFKQ969G6 155 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 SGTBQ96EQ0 304 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ZNF582Q96NG8 517 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 GPA33Q99795 319 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 CHCHD6Q9BRQ6 235 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 METTL7AQ9H8H3 244 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 CHCHD3Q9NX63 227 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ICAM5Q9UMF0 924 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 BAIAP2Q9UQB8 552 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 EXOSC1Q9Y3B2 195 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 A0A1W2PNU3 283 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 PRKYO43930 277 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ITGA10O75578 1167 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 IGFBP1P08833 259 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 SSR4P51571 173 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 GABREP78334 506 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 CRYZQ08257 329 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 SNTA1Q13424 505 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 KRR1Q13601 381 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ATP1A4Q13733 1029 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ATG4DQ86TL0 474 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 RPS19BP1Q86WX3 136 aaKnown RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 OR5M3Q8NGP4 307 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 PFN4Q8NHR9 129 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 ASB15Q8WXK1 588 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 KIAA1143Q96AT1 154 aaPredicted RBP16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 LRR1Q96L50 414 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 CDADC1Q9BWV3 514 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 DPH1Q9BZG8 443 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 NDUFB11Q9NX14 153 aa16.59■□□□□ 0.25
CCDC88C-203ENST00000389856 TMEM129A0AVI4 362 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 FUOMA2VDF0 154 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 KDM4EB2RXH2 506 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 FAM47E-STBD1D6RA91 191 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 SNX4O95219 450 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 SERPINA7P05543 415 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 HNRNPCP07910 306 aaKnown RBP eCLIP16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 MYL12AP19105 171 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 CXCR1P25024 350 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 GRK5P34947 590 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 LSM11P83369 360 aaKnown RBP eCLIP16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 CHAF1BQ13112 559 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 ACSM5Q6NUN0 579 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 C5orf46Q6UWT4 87 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 KIF18BQ86Y91 864 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 ARMC10Q8N2F6 343 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 RNF138Q8WVD3 245 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 ST8SIA1Q92185 356 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 EGLN3Q9H6Z9 239 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 RHBDL2Q9NX52 303 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 PPP4R1LQ9P1A2 415 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 FBXL4Q9UKA2 621 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 STUB1Q9UNE7 303 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 SDK2Q58EX2 2172 aa16.58■□□□□ 0.24
CCDC88C-203ENST00000389856 ANKUB1A6NFN9 424 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 OIP5O43482 229 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 POLR2HP52434 150 aaKnown RBP16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 RPS18P62269 152 aaKnown RBP16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 SSX1Q16384 188 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 JMJD6Q6NYC1 403 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 TMEM81Q6P7N7 255 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 SMARCD3Q6STE5 483 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 C16orf47Q6ZP98 133 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 GRINAQ7Z429 371 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 OAFQ86UD1 273 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 OR52I1Q8NGK6 324 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 DUSP19Q8WTR2 217 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 CENPOQ9BU64 300 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 ADAM19Q9H013 955 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 SP140LQ9H930 580 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 MEPEQ9NQ76 525 aaPredicted RBP16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 P4HTMQ9NXG6 502 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 TAS2R10Q9NYW0 307 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 VPS13AQ96RL7 3174 aa16.57■□□□□ 0.24
CCDC88C-203ENST00000389856 LOC110117498-PIK3R3F6TDL0 507 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms