RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 A0A1W2PR80 420 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 SERINC4A6NH21 518 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 HSPB6O14558 160 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 AURKAO14965 403 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CEACAM5P06731 702 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 APOBEC1P41238 236 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 FAM131AQ6UXB0 335 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 OVCH1Q7RTY7 1134 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 MOB3BQ86TA1 216 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 DMBX1Q8NFW5 382 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 GGHQ92820 318 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 TMIGD2Q96BF3 282 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 SIX2Q9NPC8 291 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 GIMAP1-GIMAP5A0A087WTJ2 511 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 LRRC10BA6NIK2 292 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CLDN24A6NM45 220 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 VAMP5O95183 116 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 PSMA1P25786 263 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 MTNR1AP48039 350 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 WDR74Q6RFH5 385 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 FAM111BQ6SJ93 734 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 GLB1L2Q8IW92 636 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CLDN22Q8N7P3 220 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 OR1J1Q8NGS3 322 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 IL4I1Q96RQ9 567 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CNN2Q99439 309 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 GPR22Q99680 433 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 TMEM181Q9P2C4 612 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 RSL24D1Q9UHA3 163 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 PCOLCE2Q9UKZ9 415 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 KCNIP3Q9Y2W7 256 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 LIPGQ9Y5X9 500 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 OR6C70A6NIJ9 312 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CRTAPO75718 401 aaPredicted RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 ARL6IP5O75915 188 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 MT-ND1P03886 318 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 GCGRP47871 477 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 HLCSP50747 726 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 ERVK-25P63136 954 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 AMIGO2Q86SJ2 522 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 FOXN4Q96NZ1 517 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 GHITMQ9H3K2 345 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 NIPAL2Q9H841 368 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 TMEM165Q9HC07 324 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 TAAR3PQ9P1P4 343 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 BAIAP2Q9UQB8 552 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 PIGBOS1A0A0B4J2F0 54 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CLDN25C9JDP6 229 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 CBX6O95503 412 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 NR4A1P22736 598 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 IVDP26440 423 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 TMBIM6P55061 237 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 UFM1P61960 85 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 RNF4P78317 190 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 SNTB2Q13425 540 aaKnown RBP8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 NPY5RQ15761 445 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 NXNL2Q5VZ03 156 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 ZSWIM9Q86XI8 627 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 MARCH9Q86YJ5 346 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 OR2Z1Q8NG97 314 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 OR51G2Q8NGK0 314 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 METRNQ9UJH8 293 aa8.49□□□□□ -1.05
LIMCH1-202ENST00000381753 B4DXG7 233 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 DNASE2O00115 360 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 PPP1R3DO95685 299 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 S100A1P23297 94 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 BRS3P32247 399 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SNCAP37840 140 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 P2RX1P51575 399 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 MC2RQ01718 297 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 PRAMEF17Q5VTA0 474 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 CCDC71Q8IV32 467 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 CIDECQ96AQ7 238 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 ZBTB8AQ96BR9 441 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 MYH13Q9UKX3 1938 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SPEF2Q9C093 1822 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 LYZL6O75951 148 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 UBOX5O94941 541 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 AKR7A3O95154 331 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 THRBP10828 461 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 EVI2BP34910 448 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 MFAP5Q13361 173 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 VASNQ6EMK4 673 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 CMTM1Q8IZ96 169 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SLC41A2Q96JW4 573 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 HSH2DQ96JZ2 352 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 TUBA4BQ9H853 241 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SCN4AP35499 1836 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 TLX2O43763 284 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 WDR1O75083 606 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 S100A6P06703 90 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 FCER2P06734 321 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 YES1P07947 543 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 TAS2R43P59537 309 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 INPP5JQ15735 1006 aaPredicted RBP8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 ZNF678Q5SXM1 525 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 GPR157Q5UAW9 335 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 UBE2Q1Q7Z7E8 422 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 VRK2Q86Y07 508 aa8.48□□□□□ -1.05
LIMCH1-202ENST00000381753 SYNPRQ8TBG9 265 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms