RNA–Protein interactions for RNA: ENST00000375740.7

MSH5-202, Transcript of mutS homolog 5, humanhuman

TSL 1 (best) BASIC

Gene MSH5, Length 2,669 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-202ENST00000375740 IFT27Q9BW83 186 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 HCAR1Q9BXC0 346 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 UBE2ZQ9H832 354 aaPredicted RBP12.85□□□□□ -0.35
MSH5-202ENST00000375740 LIN7BQ9HAP6 207 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 TNFRSF10DQ9UBN6 386 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 ZNF222Q9UK12 451 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 ERVK-19Q9WJR5 959 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 SIGLEC7Q9Y286 467 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 TMEM5Q9Y2B1 443 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 PRUNE2Q8WUY3 3088 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 PCDH15Q96QU1 1955 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 TRAV27A0A087WT01 109 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 LILRA5A6NI73 299 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 SLC30A4O14863 429 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 LANCL1O43813 399 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 PTP4A3O75365 173 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 PAHP00439 452 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 IGHA1P01876 353 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 GPR3P46089 330 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 FNTBP49356 437 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 FABP5Q01469 135 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 ZNF791Q3KP31 576 aaPredicted RBP12.85□□□□□ -0.35
MSH5-202ENST00000375740 BCL2L15Q5TBC7 163 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 NKAIN2Q5VXU1 208 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 ZNF57Q68EA5 555 aaPredicted RBP12.85□□□□□ -0.35
MSH5-202ENST00000375740 LNX2Q8N448 690 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 KLHL36Q8N4N3 616 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 SIRT6Q8N6T7 355 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 OR51G2Q8NGK0 314 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 CEP76Q8TAP6 659 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 SPRYD4Q8WW59 207 aaPredicted RBP12.85□□□□□ -0.35
MSH5-202ENST00000375740 KLHL15Q96M94 604 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 ZNF285Q96NJ3 590 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.85□□□□□ -0.35
MSH5-202ENST00000375740 SLCO1C1Q9NYB5 712 aa12.85□□□□□ -0.35
MSH5-202ENST00000375740 BET1O15155 118 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 HCN1O60741 890 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 SDC3O75056 442 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 GUSBP08236 651 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 FOXK2Q01167 660 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 INSL4Q14641 139 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 GRK1Q15835 563 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 COL13A1Q5TAT6 717 aaPredicted RBP12.84□□□□□ -0.35
MSH5-202ENST00000375740 QSOX2Q6ZRP7 698 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 MEPCEQ7L2J0 689 aaKnown RBP12.84□□□□□ -0.35
MSH5-202ENST00000375740 OR51Q1Q8NH59 317 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 MS4A3Q96HJ5 214 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 KCTD7Q96MP8 289 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 SORCS2Q96PQ0 1159 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 KCNJ15Q99712 375 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 FOXQ1Q9C009 403 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 EVA1AQ9H8M9 152 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 LRIT1Q9P2V4 623 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 SHISA3A0PJX4 238 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 BLACEA4D250 179 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 J3QRE1 110 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 TOR1AO14656 332 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 PRAMEF2O60811 474 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 MTRF1O75570 445 aaKnown RBP12.84□□□□□ -0.35
MSH5-202ENST00000375740 IFNA16P05015 189 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 TPOP07202 933 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 CT45A8P0DMV1 189 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 CT45A9P0DMV2 189 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 GABRA5P31644 462 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 RIN1Q13671 783 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 ZNF141Q15928 474 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 LGALSLQ3ZCW2 172 aaPredicted RBP12.84□□□□□ -0.35
MSH5-202ENST00000375740 CT45A2Q5DJT8 189 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 FCRLBQ6BAA4 426 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 GPR139Q6DWJ6 353 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 NIPAL3Q6P499 406 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 ASB18Q6ZVZ8 466 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 C17orf82Q86X59 251 aaPredicted RBP12.84□□□□□ -0.35
MSH5-202ENST00000375740 GID4Q8IVV7 300 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 C16orf52Q8NHV5 167 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 PTP4A1Q93096 173 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 TNFRSF13CQ96RJ3 184 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 TRIM2Q9C040 744 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 MS4A7Q9GZW8 240 aaPredicted RBP12.84□□□□□ -0.35
MSH5-202ENST00000375740 OR10A5Q9H207 317 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 FN3KQ9H479 309 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 PDE7BQ9NP56 450 aa12.84□□□□□ -0.35
MSH5-202ENST00000375740 TRAV6A0A075B6T7 132 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 A0A1B0GVC2 190 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 A6NIN4 97 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 PPM1BO75688 479 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 NGFRP08138 427 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 RPL6Q02878 288 aaKnown RBP12.83□□□□□ -0.36
MSH5-202ENST00000375740 CSTF1Q05048 431 aaKnown RBP12.83□□□□□ -0.36
MSH5-202ENST00000375740 NDUFAF6Q330K2 333 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 ALG10BQ5I7T1 473 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 RPL13AP3Q6NVV1 102 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 GPAT4Q86UL3 456 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 ADAMTS18Q8TE60 1221 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 KIAA1143Q96AT1 154 aaPredicted RBP12.83□□□□□ -0.36
MSH5-202ENST00000375740 RBP7Q96R05 134 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 Q9N2J8 555 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 PCDHGB7Q9Y5F8 929 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 FAM86C2PA6NEL3 165 aa12.83□□□□□ -0.36
MSH5-202ENST00000375740 NPIPB9F8W1W9 429 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms