RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 MUC6Q6W4X9 2439 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF367Q7RTV3 350 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 SLC43A2Q8N370 569 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 SLC15A4Q8N697 577 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 NANOGP1Q8N7R0 232 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 LRRC75AQ8NAA5 344 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 CYB561A3Q8NBI2 242 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 DEFB124Q8NES8 71 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 RPL3LQ92901 407 aaKnown RBP12.51□□□□□ -0.41
PTPRF-202ENST00000372405 KISS1RQ969F8 398 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-202ENST00000372405 DNAJA3Q96EY1 480 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 ERMAPQ96PL5 475 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-202ENST00000372405 PTDSS2Q9BVG9 487 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 KLRF1Q9NZS2 232 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 FBXL4Q9UKA2 621 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 HIF3AQ9Y2N7 669 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 CHCHD2Q9Y6H1 151 aaPredicted RBP12.51□□□□□ -0.41
PTPRF-202ENST00000372405 DOCK10Q96BY6 2186 aa12.51□□□□□ -0.41
PTPRF-202ENST00000372405 TMED7-TICAM2A0A0A6YYA0 188 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 HTR3EA5X5Y0 456 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 IGHEP01854 428 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 TSPAN19P0C672 248 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 CLUP10909 449 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 HIST1H1CP16403 213 aaKnown RBP12.5□□□□□ -0.41
PTPRF-202ENST00000372405 PRKCAP17252 672 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 AQP2P41181 271 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 CASP3P42574 277 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 RPS5P46782 204 aaKnown RBP12.5□□□□□ -0.41
PTPRF-202ENST00000372405 POLR2HP52434 150 aaKnown RBP12.5□□□□□ -0.41
PTPRF-202ENST00000372405 NFATC3Q12968 1075 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 ITGADQ13349 1161 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 MED22Q15528 200 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 KLHL22Q53GT1 634 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 ARMCX4Q5H9R4 360 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 GRINAQ7Z429 371 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 P2RY8Q86VZ1 359 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 MARCH9Q86YJ5 346 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SLC37A3Q8NCC5 494 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 OR4F15Q8NGB8 312 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 RFKQ969G6 155 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 OTULINQ96BN8 352 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 NRIP3Q9NQ35 241 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 NANSQ9NR45 359 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 BAIAP2Q9UQB8 552 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 TMED7Q9Y3B3 224 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 IER3IP1Q9Y5U9 82 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 IGLV3-32A0A0A0MS00 114 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 CCDC182A6NF36 153 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SNTNA6NMZ2 147 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SUSD5O60279 629 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 BGLAPP02818 100 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 HSMCR30P0CW71 290 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SLC2A5P22732 501 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 UQCRC1P31930 480 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 IL10RAQ13651 578 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SSPNQ14714 243 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 TMEM44Q2T9K0 475 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 ARHGAP11AQ6P4F7 1023 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 DPY19L2P2Q6ZN68 376 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 ARMC10Q8N2F6 343 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SIRT6Q8N6T7 355 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 C10orf53Q8N6V4 93 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 NACC2Q96BF6 587 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 OPALINQ96PE5 141 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 GPX7Q96SL4 187 aaPredicted RBP12.5□□□□□ -0.41
PTPRF-202ENST00000372405 MGLLQ99685 303 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF649Q9BS31 505 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 CDCP1Q9H5V8 836 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 METTL7AQ9H8H3 244 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 ERGIC3Q9Y282 383 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 WIF1Q9Y5W5 379 aa12.5□□□□□ -0.41
PTPRF-202ENST00000372405 SPAARA0A1B0GVQ0 90 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 RIIAD1A6NNX1 92 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 BLOC1S5-TXNDC5H3BN57 136 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 J3QRE1 110 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 IMPA2O14732 288 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 NOL3O60936 208 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 LIMS3P0CW19 117 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 LIMS4P0CW20 117 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 ZNF182P17025 639 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 HK1P19367 917 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 CD79BP40259 229 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 RGS6P49758 472 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 SUMO3P55854 103 aaPredicted RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 DLX5P56178 289 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 LSM3P62310 102 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 IL20RBQ6UXL0 311 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 MEPCEQ7L2J0 689 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 GID4Q8IVV7 300 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 PROKR2Q8NFJ6 384 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 OR4K13Q8NH42 304 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 DDOQ99489 341 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 KATNB1Q9BVA0 655 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 OR11A1Q9GZK7 315 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 KLHL1Q9NR64 748 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 SEC14L4Q9UDX3 406 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 EXOGQ9Y2C4 368 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 YARS2Q9Y2Z4 477 aaKnown RBP12.49□□□□□ -0.41
PTPRF-202ENST00000372405 TRAV36DV7A0A075B6V5 113 aa12.49□□□□□ -0.41
PTPRF-202ENST00000372405 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms