RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 OR5AK3PQ8NH89 298 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 COQ8BQ96D53 544 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 PPP3R2Q96LZ3 170 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 SNX18Q96RF0 628 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 OR11A1Q9GZK7 315 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 PIF1Q9H611 641 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 EXOSC3Q9NQT5 275 aaKnown RBP12.04□□□□□ -0.48
VPS29-201ENST00000360579 POLE3Q9NRF9 147 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 MKLN1Q9UL63 735 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 DNAJC15Q9Y5T4 150 aa12.04□□□□□ -0.48
VPS29-201ENST00000360579 B4DSR2 109 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 ZNF208O43345 1280 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 KRT33AO76009 404 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 SLU7O95391 586 aaKnown RBP12.03□□□□□ -0.48
VPS29-201ENST00000360579 EGR1P18146 543 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 CDH2P19022 906 aaPredicted RBP12.03□□□□□ -0.48
VPS29-201ENST00000360579 IL2RGP31785 369 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 RYKP34925 604 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 SOAT1P35610 550 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 KHKP50053 298 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 ATAD3BQ5T9A4 648 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 VHLLQ6RSH7 139 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 PAQR6Q6TCH4 344 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 GLCCI1Q86VQ1 547 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 NUP37Q8NFH4 326 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 ZNF418Q8TF45 676 aaPredicted RBP12.03□□□□□ -0.48
VPS29-201ENST00000360579 MZB1Q8WU39 189 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 WDR60Q8WVS4 1066 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 DNAJA3Q96EY1 480 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 SF3B5Q9BWJ5 86 aaKnown RBP12.03□□□□□ -0.48
VPS29-201ENST00000360579 METTL17Q9H7H0 456 aaPredicted RBP12.03□□□□□ -0.48
VPS29-201ENST00000360579 ZNF442Q9H7R0 627 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 TBK1Q9UHD2 729 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 MID2Q9UJV3 735 aa12.03□□□□□ -0.48
VPS29-201ENST00000360579 CENPVL1A0A0U1RR11 272 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 OR6C65A6NJZ3 312 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 RIPK2O43353 540 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 FGF4P08620 206 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 IFNGR1P15260 489 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 PRPS1L1P21108 318 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 CRHR1P34998 444 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 POLR2HP52434 150 aaKnown RBP12.02□□□□□ -0.49
VPS29-201ENST00000360579 RPS26P62854 115 aaKnown RBP12.02□□□□□ -0.49
VPS29-201ENST00000360579 HBA1P69905 142 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 NAAAQ02083 359 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 PTGR1Q14914 329 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 TBRG1Q3YBR2 411 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 AP1ARQ63HQ0 302 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 ANKRD16Q6P6B7 361 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 EMBQ6PCB8 327 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 AAED1Q7RTV5 226 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 C6orf120Q7Z4R8 191 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 ARFGAP2Q8N6H7 521 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 FAM169BQ8N8A8 192 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 UBASH3BQ8TF42 649 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 TWIST2Q8WVJ9 160 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 GCDHQ92947 438 aaPredicted RBP12.02□□□□□ -0.49
VPS29-201ENST00000360579 SLC35G5Q96KT7 338 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 ANKRD27Q96NW4 1050 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 DUSP26Q9BV47 211 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 CRNNQ9UBG3 495 aaPredicted RBP12.02□□□□□ -0.49
VPS29-201ENST00000360579 WDR45Q9Y484 360 aa12.02□□□□□ -0.49
VPS29-201ENST00000360579 TMED7-TICAM2A0A0A6YYA0 188 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 ARPC4-TTLL3A0A0A6YYG9 625 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 FAM157AC9JC47 383 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 ZNF587BE7ETH6 402 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 hCG_2039718K7EN88 272 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 PIP5K1BO14986 540 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 IMPDH2P12268 514 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 CCNA2P20248 432 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 NPR2P20594 1047 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 IDH2P48735 452 aaKnown RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 LGALS3BPQ08380 585 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 RIN1Q13671 783 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 MAPK14Q16539 360 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 WHAMMP3Q1A5X7 153 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 ATP6AP1LQ52LC2 224 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 OTUD3Q5T2D3 398 aaPredicted RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 SHQ1Q6PI26 577 aaKnown RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 TEX29Q8N6K0 151 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 OR9K2Q8NGE7 335 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 OR1K1Q8NGR3 316 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 MIPOL1Q8TD10 442 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 MAGEE2Q8TD90 523 aaPredicted RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 FAM216AQ8WUB2 273 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 ANP32BQ92688 251 aaKnown RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 AURKBQ96GD4 344 aaPredicted RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 SERHL2Q9H4I8 314 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 DYNLRB1Q9NP97 96 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.01□□□□□ -0.49
VPS29-201ENST00000360579 TMED7Q9Y3B3 224 aa12.01□□□□□ -0.49
VPS29-201ENST00000360579 RNF103-CHMP3A0A140T963 221 aa12□□□□□ -0.49
VPS29-201ENST00000360579 A0A1W2PPM1 405 aa12□□□□□ -0.49
VPS29-201ENST00000360579 TMEM89A2RUT3 159 aa12□□□□□ -0.49
VPS29-201ENST00000360579 TRIM77I1YAP6 450 aa12□□□□□ -0.49
VPS29-201ENST00000360579 KCNAB3O43448 404 aa12□□□□□ -0.49
VPS29-201ENST00000360579 TRIM13O60858 407 aa12□□□□□ -0.49
VPS29-201ENST00000360579 PEX11AO75192 247 aa12□□□□□ -0.49
VPS29-201ENST00000360579 IGLV1-44P01699 117 aa12□□□□□ -0.49
VPS29-201ENST00000360579 GPIP06744 558 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms