RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 TRAF4Q9BUZ4 470 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 PARP12Q9H0J9 701 aaKnown RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 ACSS1Q9NUB1 689 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 CPNE7Q9UBL6 633 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 LEUTXA8MZ59 168 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 OR8G3PP0DMU2 310 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 CCDC88AQ3V6T2 1871 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 KREMEN2Q8NCW0 462 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 ARRDC2Q8TBH0 407 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 PLEKHA3Q9HB20 300 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 TAF9BQ9HBM6 251 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 SPACA1Q9HBV2 294 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 TMEM100Q9NV29 134 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 SLC35A3Q9Y2D2 325 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 CCDC85CA6NKD9 419 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 FXYD1O00168 92 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 DFFBO76075 338 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 AOAHP28039 575 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 UBE2MP61081 183 aaKnown RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 LPCAT3Q6P1A2 487 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 USP50Q70EL3 339 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 OR8D4Q8NGM9 314 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 RNF170Q96K19 258 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 SLC25A21Q9BQT8 299 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 IGKV6-21A0A0C4DH24 114 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 A0A0G2JLL6 359 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 EDDM13A0A1B0GTR0 161 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 PAPLNO95428 1278 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 GLAP06280 429 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 CCR7P32248 378 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 RNF4P78317 190 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 MRPS34P82930 218 aaKnown RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 ACTBL2Q562R1 376 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 PRRT3Q5FWE3 981 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 PRRT2Q7Z6L0 340 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 OR4D10Q8NGI6 311 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 CDS1Q92903 461 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 MIB2Q96AX9 1013 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 FAM71F1Q96KD3 344 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 PAAF1Q9BRP4 392 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 TMEM121BQ9BXQ6 578 aaPredicted RBP11.29□□□□□ -0.6
COL12A1-202ENST00000345356 ISYNA1Q9NPH2 558 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 POMT2Q9UKY4 750 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 HHLA2Q9UM44 414 aa11.29□□□□□ -0.6
COL12A1-202ENST00000345356 C4AP0C0L4 1744 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 C4BP0C0L5 1744 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 YKT6O15498 198 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 IQCF3P0C7M6 154 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 EMP2P54851 167 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 HSD17B11Q8NBQ5 300 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 BRI3BPQ8WY22 251 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 TOLLIPQ9H0E2 274 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 B3GAT2Q9NPZ5 323 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 PCDHGA5Q9Y5G8 931 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ETV7Q9Y603 341 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 EIF4EP06730 217 aaKnown RBP11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ACHEP22303 614 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 OMGP23515 440 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 EPHA2P29317 976 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ZNF792Q3KQV3 632 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 OR5M10Q6IEU7 315 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 FAM111BQ6SJ93 734 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 COX15Q7KZN9 410 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 C1orf87Q8N0U7 546 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ST6GAL2Q96JF0 529 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 TNFRSF12AQ9NP84 129 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 SYT5O00445 386 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ZNF28P17035 718 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 SERPINA2P20848 420 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 RAB13P51153 203 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 SNRPEP62304 92 aaKnown RBP11.28□□□□□ -0.6
COL12A1-202ENST00000345356 RPL23AP62750 156 aaKnown RBP11.28□□□□□ -0.6
COL12A1-202ENST00000345356 TMEM207Q6UWW9 146 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ACOT7LQ6ZUV0 252 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 KLHDC8BQ8IXV7 354 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 MCOLN1Q9GZU1 580 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 PELI2Q9HAT8 420 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 RRAGCQ9HB90 399 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ZNF443Q9Y2A4 671 aaPredicted RBP11.28□□□□□ -0.6
COL12A1-202ENST00000345356 DCTN6O00399 190 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 STC2O76061 302 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 OPRD1P41143 372 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 ACSM1Q08AH1 577 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 APCDD1Q8J025 514 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 TMEM68Q96MH6 324 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 TXN2Q99757 166 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 GNG13Q9P2W3 67 aa11.28□□□□□ -0.6
COL12A1-202ENST00000345356 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.28□□□□□ -0.6
COL12A1-202ENST00000345356 UMAD1C9J7I0 102 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 ZNF587BE7ETH6 402 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 HBE1P02100 147 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 OR2T7P0C7T2 308 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 PTAFRP25105 342 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 OR1Q1Q15612 314 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 Q499Y3 187 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 GGTA1PQ4G0N0 100 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 OR2T27Q8NH04 317 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 SLC2A12Q8TD20 617 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 OR7D2Q96RA2 312 aa11.27□□□□□ -0.6
COL12A1-202ENST00000345356 SMG9Q9H0W8 520 aaKnown RBP11.27□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms