RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 COLEC11Q9BWP8 271 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C2orf42Q9NWW7 574 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 NUDT4Q9NZJ9 180 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PRAMEF27A3QJZ7 478 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PRAMEF25A6NGN4 478 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 G3V3Q6 166 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MEIS2O14770 477 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SLC25A17O43808 307 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PRAMEF4O60810 478 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GRAP2O75791 330 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CLDN9O95484 217 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GBAP04062 536 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OSMP13725 252 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ELK1P19419 428 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SSTR4P31391 388 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CASRP41180 1078 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ZP1P60852 638 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SPIBQ01892 262 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SCAPQ12770 1279 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 KLF9Q13886 244 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PTPRNQ16849 979 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FBXO47Q5MNV8 452 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OTUD1Q5VV17 481 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PRAMEF9Q5VWM5 478 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 STEAP1BQ6NZ63 245 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 NUFIP2Q7Z417 695 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 WDFY1Q8IWB7 410 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ARL14EPQ8N8R7 260 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR4C5Q8NGB2 326 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GPR78Q96P69 363 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ZIC5Q96T25 663 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 DOHHQ9BU89 302 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TLNRD1Q9H1K6 362 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SLC52A3Q9NQ40 469 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SLC35D1Q9NTN3 355 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PLEK2Q9NYT0 353 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 NTMQ9P121 344 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 STEAP1Q9UHE8 339 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 USP54Q70EL1 1684 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C4AP0C0L4 1744 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C4BP0C0L5 1744 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ALG1L2C9J202 215 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 J3QR89 54 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SOD1P00441 154 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PDYNP01213 254 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ATP1B1P05026 303 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 BPIP17213 487 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 WNT3P56703 355 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HIST1H3AP68431 136 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 BTN3A2P78410 334 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SLC17A1Q14916 467 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 TMEM132DQ14C87 1099 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HERPUD1Q15011 391 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 EIPR1Q53HC9 387 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 KHDC3LQ587J8 217 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 AWAT1Q58HT5 328 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C6orf136Q5SQH8 315 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 FAM71E1Q6IPT2 247 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CALHM3Q86XJ0 350 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GJD3Q8N144 294 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SLC35G3Q8N808 338 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HJURPQ8NCD3 748 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR2AK2Q8NG84 335 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR5M8Q8NGP6 311 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 THEM6Q8WUY1 208 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 CDS1Q92903 461 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 NT5C3BQ969T7 300 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 KCNC2Q96PR1 638 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MIEN1Q9BRT3 115 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SARGQ9BW04 601 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HDAC8Q9BY41 377 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ACTL8Q9H568 366 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PLAC1Q9HBJ0 212 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PIPOXQ9P0Z9 390 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ASF1AQ9Y294 204 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 BORCS7-ASMTA0A0B4J1R7 106 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ZNF724A8MTY0 619 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SUPT3HB4E1H0 165 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 GABARAPH6UMI1 98 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ONECUT3O60422 494 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 RAB40ALP0C0E4 278 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 KHKP50053 298 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 AGFG1P52594 562 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OSTNP61366 133 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 UFM1P61960 85 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PRR5P85299 388 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ACOT6Q3I5F7 207 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MRNIPQ6NTE8 343 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 DPY19L2P2Q6ZN68 376 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 PHYKPLQ8IUZ5 450 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C9orf40Q8IXQ3 194 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 C2CD4AQ8NCU7 369 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 OR5B17Q8NGF7 314 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 SP7Q8TDD2 431 aaPredicted RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 HAVCR2Q8TDQ0 301 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 RAB40AQ8WXH6 277 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 ARNTL2Q8WYA1 636 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 DTD2Q96FN9 168 aa3.86□□□□□ -1.79
NEDD4-201ENST00000338963 MRPL13Q9BYD1 178 aaKnown RBP3.86□□□□□ -1.79
NEDD4-201ENST00000338963 AMBNQ9NP70 447 aa3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms