RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 J3KTA2 159 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 LDB3O75112 727 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 ZNF780AO75290 641 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 TK1P04183 234 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 FXYD4P59646 89 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 MLLT11Q13015 90 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 ACSM3Q53FZ2 586 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 Q6ZPB1 254 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 CFAP77Q6ZQR2 320 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 OR56B1Q8NGI3 324 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 LKAAEAR1Q8TD35 194 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 SLC6A18Q96N87 628 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 NT5DC2Q9H857 520 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 NKX6-3A6NJ46 265 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 C4orf47A7E2U8 309 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 SYT5O00445 386 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 TCN2P20062 427 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 GK2Q14410 553 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 LPAL2Q16609 132 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 UBE2UQ5VVX9 321 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 CUEDC1Q9NWM3 386 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 AHDC1Q5TGY3 1603 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 MYH9P35579 1960 aaKnown RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 TRAV36DV7A0A075B6V5 113 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 TMEM269A0A1B0GVZ9 245 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 ANKRD34BA5PLL1 514 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 ZNF705EA8MWA4 302 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 ZNF44P15621 663 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 MSR1P21757 451 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 AAED1Q7RTV5 226 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 KLHDC8BQ8IXV7 354 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 ZADH2Q8N4Q0 377 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 C4AP0C0L4 1744 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.82■□□□□ 0.44
UPF1-201ENST00000262803 TMEM212A6NML5 194 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 CD27P26842 260 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 SLC6A11P48066 632 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 ZNF91Q05481 1191 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 MBTPS1Q14703 1052 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 CD300LGQ6UXG3 332 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 MYLIPQ8WY64 445 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 BOD1Q96IK1 185 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 BABAM2Q9NXR7 383 aa17.82■□□□□ 0.44
UPF1-201ENST00000262803 ARGFXA6NJG6 315 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 CLDN24A6NM45 220 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 UBFD1O14562 309 aaKnown RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 ACOT8O14734 319 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 SLC34A2O95436 690 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 GIPRP48546 466 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 F2RL1P55085 397 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 DMWDQ09019 674 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 OR8J2Q8NGG1 315 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 SYNPRQ8TBG9 265 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 S100PBPQ96BU1 408 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 THAP7Q9BT49 309 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 C1orf198Q9H425 327 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 NUMBLQ9Y6R0 609 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 CHD4Q14839 1912 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 DCDC2BA2VCK2 349 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 FAM183AA6NL82 134 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 NUDT21O43809 227 aaKnown RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 KNG1P01042 644 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 KIR2DL3P43628 341 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 SEMA3BQ13214 749 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 DCUN1D4Q92564 292 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 SNX18Q96RF0 628 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 CMSS1Q9BQ75 279 aaKnown RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 PBX4Q9BYU1 374 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 ATP13A2Q9NQ11 1180 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 PRSS16Q9NQE7 514 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 MTHFD2P13995 350 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 ZNF26P17031 533 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 TNFSF8P32971 234 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 NOXA1Q86UR1 476 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 LRRC28Q86X40 367 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 VRK2Q86Y07 508 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 LCORQ96JN0 433 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 ELOVL3Q9HB03 270 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 RHBDD3Q9Y3P4 386 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 LSM5Q9Y4Y9 91 aaKnown RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 A0A1W2PQ09 198 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 RAD1O60671 282 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 AIFM1O95831 613 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 TPT1P13693 172 aaKnown RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 POU3F1Q03052 451 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 LEXMQ3ZCV2 418 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 RHOXF1Q8NHV9 184 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 SLC25A43Q8WUT9 341 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 RPL3LQ92901 407 aaKnown RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 NKX3-1Q99801 234 aaPredicted RBP17.81■□□□□ 0.44
UPF1-201ENST00000262803 PRDM9Q9NQV7 894 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 ZNF281Q9Y2X9 895 aa17.81■□□□□ 0.44
UPF1-201ENST00000262803 TAS2R30P59541 319 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 METAP1DQ6UB28 335 aaPredicted RBP17.8■□□□□ 0.44
UPF1-201ENST00000262803 LMNTD1Q8N9Z9 388 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 OR7G2Q8NG99 324 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 OR6F1Q8NGZ6 308 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 CNTNAP3BQ96NU0 1288 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 SLC25A18Q9H1K4 315 aa17.8■□□□□ 0.44
UPF1-201ENST00000262803 SERINC4A6NH21 518 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms