RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 PCDHGA5Q9Y5G8 931 aa9.82□□□□□ -0.84
USP28-201ENST00000003302 PHF3Q92576 2039 aaKnown RBP9.82□□□□□ -0.84
USP28-201ENST00000003302 ATMQ13315 3056 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 URB1O60287 2271 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 TPD52L2O43399 206 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 ANXA7P20073 488 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 GDI1P31150 447 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 MTNR1BP49286 362 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 ZNF81P51508 661 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 TRA2BP62995 288 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 ERVK-25P63136 954 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 NPSR1Q6W5P4 371 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 BRIX1Q8TDN6 353 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 MOGAT1Q96PD6 335 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 UBL7Q96S82 380 aaPredicted RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 AMELYQ99218 206 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 MICU1Q9BPX6 476 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 PCBD2Q9H0N5 130 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 ISYNA1Q9NPH2 558 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 SLC22A7Q9Y694 548 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 RPN2P04844 631 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 FBXO45P0C2W1 286 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 SMIM10L1P0DMW3 83 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 LAMP2P13473 410 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 EXOSC2Q13868 293 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 PXDC1Q5TGL8 231 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 RTN4RL2Q86UN3 420 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 SMIM10Q96HG1 83 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 GTPBP2Q9BX10 602 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 GON7Q9BXV9 100 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 MED28Q9H204 178 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 OR51J1Q9H342 316 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 SRMSQ9H3Y6 488 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 PPIEQ9UNP9 301 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 LOC105371267A0A1B0GV96 52 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 BMP7P18075 431 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 HK1P19367 917 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 RAB3BP20337 219 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 MST1P26927 711 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 RAD52P43351 418 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 GDI2P50395 445 aaKnown RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 PRAMEF17Q5VTA0 474 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 MZT2BQ6NZ67 158 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 BHLHB9Q6PI77 547 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 APOOLQ6UXV4 268 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 LIX1LQ8IVB5 337 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 HOMEZQ8IX15 550 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 FAM109AQ8N4B1 249 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 RSC1A1Q92681 617 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 ANKRD9Q96BM1 317 aaPredicted RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 PHPT1Q9NRX4 125 aaPredicted RBP9.81□□□□□ -0.84
USP28-201ENST00000003302 ING3Q9NXR8 418 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 HCN3Q9P1Z3 774 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 SLC6A5Q9Y345 797 aa9.81□□□□□ -0.84
USP28-201ENST00000003302 TRABD2BA6NFA1 517 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 TVP23AA6NH52 213 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 F13BP05160 661 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 RPS4Y1P22090 263 aaKnown RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 SGCGQ13326 291 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 FCRLAQ7L513 359 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 PIAS4Q8N2W9 510 aaPredicted RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 CREB3L1Q96BA8 519 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 TRIM36Q9NQ86 728 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 KLHL28Q9NXS3 571 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 THADAQ6YHU6 1953 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 SOX1O00570 391 aaPredicted RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 GDNFP39905 211 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 EFNB2P52799 333 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 ALG10BQ5I7T1 473 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 C1QL3Q5VWW1 255 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 LRRC69Q6ZNQ3 347 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 BPHLQ86WA6 291 aaPredicted RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 NDC1Q9BTX1 674 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 DLL4Q9NR61 685 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 MOKQ9UQ07 419 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 TRAV8-7A0A075B6U6 113 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 A0A0B4J2E0 115 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 A0A1B0GX12 115 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 C7orf66A4D0T2 115 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 S1PR1P21453 382 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 TOMM5Q8N4H5 51 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 AVL9Q8NBF6 648 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 GALNT6Q8NCL4 622 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 TM4SF19Q96DZ7 209 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 SIPA1Q96FS4 1042 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 PIGUQ9H490 435 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 NANSQ9NR45 359 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 MYEF2Q9P2K5 600 aaKnown RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 STX11O75558 287 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 OR8G3PP0DMU2 310 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 MAOAP21397 527 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 MAOBP27338 520 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 CDKN2AP42771 156 aaKnown RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 GUCA2AQ02747 115 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 KLF9Q13886 244 aaPredicted RBP9.8□□□□□ -0.84
USP28-201ENST00000003302 GLB1L2Q8IW92 636 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 ZNF619Q8N2I2 560 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 OR2T35Q8NGX2 323 aa9.8□□□□□ -0.84
USP28-201ENST00000003302 WBP1Q96G27 269 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms