RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 PRKD3O94806 890 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 F2RL1P55085 397 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CCNJQ5T5M9 372 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PIP5KL1Q5T9C9 394 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 WBP2NLQ6ICG8 309 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TMEM214Q6NUQ4 689 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 AHSA2Q719I0 299 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 C2CD4AQ8NCU7 369 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZIM3Q96PE6 472 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RBM4BQ9BQ04 359 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RBM4Q9BWF3 364 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF221Q9UK13 617 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 NEUROG3Q9Y4Z2 214 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 U3KQV3 271 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CHD5Q8TDI0 1954 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 DHRS12A0PJE2 317 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 OR6C6A6NF89 314 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 HCRTR1O43613 425 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ADAM23O75077 832 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TFPTP0C1Z6 253 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CPMP14384 443 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CDK9P50750 372 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 AGFG1P52594 562 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CNPY1Q3B7I2 92 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 C17orf107Q6ZR85 190 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ERI1Q8IV48 349 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 NFKBIDQ8NI38 313 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SUN5Q8TC36 379 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 NMD3Q96D46 503 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TPT1P8Q9HAU6 139 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZDHHC9Q9Y397 364 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TNS1Q9HBL0 1735 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 USF3Q68DE3 2245 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 IGHV3-20A0A0C4DH32 117 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CLDN25C9JDP6 229 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 C16orf97H3BN30 126 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SOCS2O14508 198 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 AHSGP02765 367 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ST6GAL1P15907 406 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 EDNRAP25101 427 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 AGTR1P30556 359 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PTGIRP43119 386 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RAB5BP61020 215 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PLA2G7Q13093 441 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RTP5Q14D33 572 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 C2orf76Q3KRA6 126 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RAB41Q5JT25 222 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ARSKQ6UWY0 536 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF836Q6ZNA1 936 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 POU5F2Q8N7G0 328 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 OR7G3Q8NG95 312 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 OR2Y1Q8NGV0 311 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 YAE1D1Q9NRH1 226 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PNPLA3Q9NST1 481 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SLC39A9Q9NUM3 307 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PDP1Q9P0J1 537 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 LINC00854A0A1B0GVQ3 168 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF732B4DXR9 585 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 M0R036 132 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 LRRTM2O43300 516 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CLN5O75503 358 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CCNKO75909 580 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SIX3O95343 332 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 STAG3L2P0CL84 134 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 DEFA4P12838 97 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 MMP11P24347 488 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 HTR2AP28223 471 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PRKXP51817 358 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ADAM17P78536 824 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 BCL2L15Q5TBC7 163 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PRAMEF17Q5VTA0 474 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 AGBL4Q5VU57 503 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 DCDC5Q6ZRR9 648 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 UBTD2Q8WUN7 234 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CPNE4Q96A23 557 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SLC7A6OSQ96CW6 309 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SLC39A13Q96H72 371 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ZNF184Q99676 751 aaPredicted RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PIMREGQ9BSJ6 248 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 PATZ1Q9HBE1 687 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 LOC100506127A0A0U1RQW1 187 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 RAB4AP20338 218 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 MAOAP21397 527 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 IL2RGP31785 369 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 MAP2K4P45985 399 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SRP9P49458 86 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ATP1B3P54709 279 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 CYCSP99999 105 aaKnown RBP4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TNFRSF17Q02223 184 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 LIPEQ05469 1076 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 GGTLC2Q14390 218 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 OR8G1Q15617 311 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 ATG9BQ674R7 924 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 TMEM65Q6PI78 240 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 SYT14Q8NB59 555 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 GLRX2Q9NS18 164 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 LY75O60449 1722 aa4.66□□□□□ -1.66
SCN1A-218ENST00000640036 BANF1O75531 89 aa4.65□□□□□ -1.66
SCN1A-218ENST00000640036 RGS11O94810 467 aa4.65□□□□□ -1.66
SCN1A-218ENST00000640036 CH25HO95992 272 aa4.65□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms