RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 EFCAB10A6NFE3 127 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 SERPINA7P05543 415 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 CEACAM1P13688 526 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 ZNF91Q05481 1191 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 LTBQ06643 244 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 ST3GAL4Q11206 333 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 ATP1A4Q13733 1029 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 GTF2IRD2BQ6EKJ0 949 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 GTF2IRD2Q86UP8 949 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 ADGRG3Q86Y34 549 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 RAB43Q86YS6 212 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 STX19Q8N4C7 294 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 SVOPQ8N4V2 548 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 ADAMTS17Q8TE56 1095 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 KTI12Q96EK9 354 aaPredicted RBP15.32■□□□□ 0.04
CLN3-252ENST00000636907 PLEKHA8Q96JA3 519 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 TMED7Q9Y3B3 224 aa15.32■□□□□ 0.04
CLN3-252ENST00000636907 TMEM72A0PK05 275 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 CCDC160A6NGH7 325 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 CDRT15L2A8MXV6 281 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 KDM4EB2RXH2 506 aaPredicted RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 SUSD5O60279 629 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 INMTO95050 263 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 NDUFB2O95178 105 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 PPP1R3DO95685 299 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 ADRA2AP08913 450 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 DBTP11182 482 aaKnown RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 PIPP12273 146 aaPredicted RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 PRKCAP17252 672 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 CD82P27701 267 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 MSX1P28360 303 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 RBMS1P29558 406 aaKnown RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 SLC6A6P31641 620 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 NOVA1P51513 510 aaKnown RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 FOXK2Q01167 660 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 INPP5JQ15735 1006 aaPredicted RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 GXYLT1Q4G148 440 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 SLC35F1Q5T1Q4 408 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 PRAMEF20Q5VT98 475 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 B3GNTL1Q67FW5 361 aaPredicted RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 H3F3CQ6NXT2 135 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 ARSKQ6UWY0 536 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 CCDC81Q6ZN84 652 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 SLC43A2Q8N370 569 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 TMEM156Q8N614 296 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 IL22RA1Q8N6P7 574 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 SIRT6Q8N6T7 355 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 C10orf53Q8N6V4 93 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 ANKK1Q8NFD2 765 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 OR13F1Q8NGS4 319 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 LIPHQ8WWY8 451 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 TMEM234Q8WY98 164 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 ST8SIA1Q92185 356 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 TAAR8Q969N4 342 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 DGCR14Q96DF8 476 aaKnown RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 MOGAT1Q96PD6 335 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 NPAS1Q99742 590 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 CPNE5Q9HCH3 593 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 ACOT13Q9NPJ3 140 aa15.31■□□□□ 0.04
CLN3-252ENST00000636907 RPL36Q9Y3U8 105 aaKnown RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 ZFHX2Q9C0A1 2572 aaPredicted RBP15.31■□□□□ 0.04
CLN3-252ENST00000636907 TNFSF12-TNFSF13A0A0A6YY99 330 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 ZC3H12DA2A288 527 aaKnown RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 PRODHO43272 600 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 SEC14L2O76054 403 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 HTR3AP46098 478 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 RPS4XP62701 263 aaKnown RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 ZNF468Q5VIY5 522 aaPredicted RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 TMEM81Q6P7N7 255 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 DND1Q8IYX4 353 aaKnown RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 SECISBP2Q96T21 854 aaKnown RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 SH2D2AQ9NP31 389 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 HINT3Q9NQE9 182 aaKnown RBP15.3■□□□□ 0.04
CLN3-252ENST00000636907 NANSQ9NR45 359 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 VDAC3Q9Y277 283 aa15.3■□□□□ 0.04
CLN3-252ENST00000636907 AHCTF1Q8WYP5 2266 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 ZNF99A8MXY4 864 aaPredicted RBP15.29■□□□□ 0.04
CLN3-252ENST00000636907 MCIDASD6RGH6 385 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 SLC25A12O75746 678 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 ASAH2BP0C7U1 165 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 CCL3P10147 92 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 TTKP33981 857 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 RPS5P46782 204 aaKnown RBP15.29■□□□□ 0.04
CLN3-252ENST00000636907 DLX5P56178 289 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 SNTA1Q13424 505 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 CNPY1Q3B7I2 92 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 AADACL4Q5VUY2 407 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 C1QL3Q5VWW1 255 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 IGFN1Q86VF2 1251 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 DTX1Q86Y01 620 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 CLVS1Q8IUQ0 354 aaPredicted RBP15.29■□□□□ 0.04
CLN3-252ENST00000636907 WDSUB1Q8N9V3 476 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 OR2M3Q8NG83 312 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 RORBQ92753 470 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 FRMD6Q96NE9 622 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 ASCL3Q9NQ33 180 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 HPF1Q9NWY4 346 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 BAIAP2Q9UQB8 552 aa15.29■□□□□ 0.04
CLN3-252ENST00000636907 PCDHGB6Q9Y5F9 930 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms