RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 FUT5Q11128 374 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 GPAT3Q53EU6 434 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 ATG4DQ86TL0 474 aaPredicted RBP16.25■□□□□ 0.19
CLN3-241ENST00000635861 ANKRD46Q86W74 232 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 RAB8BQ92930 207 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 ZNF775Q96BV0 537 aaPredicted RBP16.25■□□□□ 0.19
CLN3-241ENST00000635861 PPP1R36Q96LQ0 422 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 TRNT1Q96Q11 434 aaKnown RBP16.25■□□□□ 0.19
CLN3-241ENST00000635861 SORT1Q99523 831 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 MEAF6Q9HAF1 191 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 ASB6Q9NWX5 421 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 TAS2R16Q9NYV7 291 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 TMEM181Q9P2C4 612 aa16.25■□□□□ 0.19
CLN3-241ENST00000635861 ALPK2Q86TB3 2170 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 CIB4A0PJX0 185 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 WDR91A4D1P6 747 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 MRPL33O75394 65 aaKnown RBP16.24■□□□□ 0.19
CLN3-241ENST00000635861 CD8AP01732 235 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 IGHV4-39P01824 125 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 TP53P04637 393 aaPredicted RBP16.24■□□□□ 0.19
CLN3-241ENST00000635861 UQCRBP14927 111 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 EDNRAP25101 427 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 S100A3P33764 101 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 H3F3AP84243 136 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 GNA13Q14344 377 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 SPANXN4Q5MJ08 99 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 ADGRG3Q86Y34 549 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 UBE2J2Q8N2K1 259 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 DDIT4LQ96D03 193 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 ARL5BQ96KC2 179 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 C20orf27Q9GZN8 174 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 PARPBPQ9NWS1 579 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 NPAP1Q9NZP6 1156 aa16.24■□□□□ 0.19
CLN3-241ENST00000635861 FBN1P35555 2871 aaKnown RBP16.23■□□□□ 0.19
CLN3-241ENST00000635861 KIAA1324LA8MWY0 1029 aaPredicted RBP16.23■□□□□ 0.19
CLN3-241ENST00000635861 HMGN4O00479 90 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 RAMP1O60894 148 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 RYKP34925 604 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 ACVR1BP36896 505 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 CASP9P55211 416 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 SLC35A1P78382 337 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 CHRNEQ04844 493 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 FAPQ12884 760 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 FAM174BQ3ZCQ3 159 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 LRRC74BQ6ZQY2 392 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 OLIG3Q7RTU3 272 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 C17orf78Q8N4C9 275 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 C1orf162Q8NEQ5 155 aaPredicted RBP16.23■□□□□ 0.19
CLN3-241ENST00000635861 ADAD1Q96M93 576 aaKnown RBP16.23■□□□□ 0.19
CLN3-241ENST00000635861 MUS81Q96NY9 551 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 NAA11Q9BSU3 229 aaPredicted RBP16.23■□□□□ 0.19
CLN3-241ENST00000635861 DCTN4Q9UJW0 460 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 SLC9A8Q9Y2E8 581 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 SLC25A15Q9Y619 301 aa16.23■□□□□ 0.19
CLN3-241ENST00000635861 AGAP5A6NIR3 686 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 RAD51DO75771 328 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 IDH2P48735 452 aaKnown RBP16.22■□□□□ 0.19
CLN3-241ENST00000635861 POLR2HP52434 150 aaKnown RBP16.22■□□□□ 0.19
CLN3-241ENST00000635861 DSCR9P59020 149 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 STX3Q13277 289 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.22■□□□□ 0.19
CLN3-241ENST00000635861 DEPDC4Q8N2C3 294 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 ZG16BQ96DA0 208 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 PANX1Q96RD7 426 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 DHRS9Q9BPW9 319 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 NUF2Q9BZD4 464 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 AMBRA1Q9C0C7 1298 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 SLC38A1Q9H2H9 487 aa16.22■□□□□ 0.19
CLN3-241ENST00000635861 MTHFD2LQ9H903 347 aaPredicted RBP16.22■□□□□ 0.19
CLN3-241ENST00000635861 TMED7-TICAM2A0A0A6YYA0 188 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 PRAMEF27A3QJZ7 478 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 CCT8L1PA6NM43 557 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 CD5LO43866 347 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 BCAS1O75363 584 aaPredicted RBP16.21■□□□□ 0.19
CLN3-241ENST00000635861 RPS4Y1P22090 263 aaKnown RBP16.21■□□□□ 0.19
CLN3-241ENST00000635861 TTKP33981 857 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 SLC1A3P43003 542 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 SLC18A1P54219 525 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 PLAURQ03405 335 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 SPATA19Q7Z5L4 167 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 RNF130Q86XS8 419 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 ZNF440Q8IYI8 595 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 GLB1L3Q8NCI6 653 aaPredicted RBP16.21■□□□□ 0.19
CLN3-241ENST00000635861 SPATA3Q8NHX4 192 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 WDR60Q8WVS4 1066 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 PIF1Q9H611 641 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 CBLN4Q9NTU7 201 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 AIG1Q9NVV5 245 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 TMED7Q9Y3B3 224 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 ARFGEF3Q5TH69 2177 aa16.21■□□□□ 0.19
CLN3-241ENST00000635861 CCDC154A6NI56 674 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 PDLIM1O00151 329 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 PGRP06401 933 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 DBIP07108 87 aaKnown RBP16.2■□□□□ 0.18
CLN3-241ENST00000635861 BGNP21810 368 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 CD40P25942 277 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 OR2B6P58173 313 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 TGFBR3Q03167 851 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 MPP2Q14168 576 aa16.2■□□□□ 0.18
CLN3-241ENST00000635861 GABRA6Q16445 453 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms