RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 A6NIN4 97 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 BCAT2O15382 392 aaPredicted RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 SOX30O94993 753 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 IL1AP01583 271 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 PEPDP12955 493 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 GRPRP30550 384 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 EIF2B2P49770 351 aaKnown RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 SLC37A1P57057 533 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ERVK-25P63136 954 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 NSDHLQ15738 373 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 TCTE1Q5JU00 501 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 TMEM91Q6ZNR0 172 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 C16orf47Q6ZP98 133 aaPredicted RBP9.74□□□□□ -0.85
CUX1-221ENST00000622516 GRAMD2AQ8IUY3 354 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 GID4Q8IVV7 300 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ARIH2OSQ8N7S6 290 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 LSMEM1Q8N8F7 131 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 OR13C5Q8NGS8 318 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 SMPDL3BQ92485 455 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 RASD2Q96D21 266 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 C4orf36Q96KX1 117 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ZNF426Q9BUY5 554 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 ADGRL4Q9HBW9 690 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 POLE3Q9NRF9 147 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 BABAM2Q9NXR7 383 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 TBC1D24Q9ULP9 559 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 TMEM5Q9Y2B1 443 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 SLC35A3Q9Y2D2 325 aa9.74□□□□□ -0.85
CUX1-221ENST00000622516 FABP12A6NFH5 140 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 HPGDSO60760 199 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 SBK2P0C263 348 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 ZNF3P17036 446 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 HSD11B2P80365 405 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 TP53I3Q53FA7 332 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 AGAP7PQ5VUJ5 663 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 OTPQ5XKR4 325 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 IL20RBQ6UXL0 311 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 ZNF550Q7Z398 422 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 NRARPQ7Z6K4 114 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 NR2C2APQ86WQ0 139 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 ESX1Q8N693 406 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 SCAIQ8N9R8 606 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 C3orf49Q96BT1 292 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 TSSK2Q96PF2 358 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 DEPDC7Q96QD5 511 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 DPYSL5Q9BPU6 564 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 TMCC2O75069 709 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 HK1P19367 917 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 PYCR1P32322 319 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 BCL2A1Q16548 175 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 LANCL3Q6ZV70 420 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 TMPRSS9Q7Z410 1059 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 SYT9Q86SS6 491 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 OR5J2Q8NH18 312 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 OR5W2Q8NH69 310 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 MOSPD2Q8NHP6 518 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 MOGAT1Q96PD6 335 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 MKKSQ9NPJ1 570 aaPredicted RBP9.73□□□□□ -0.85
CUX1-221ENST00000622516 GMEB2Q9UKD1 530 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 MKL2Q9ULH7 1088 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 ZMIZ1Q9ULJ6 1067 aa9.73□□□□□ -0.85
CUX1-221ENST00000622516 TRDV1A0A1B0GX56 115 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 A0A1W2PQ09 198 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ISPDA4D126 451 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 H0YIG0 161 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 GTPBP1O00178 669 aaKnown RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 TFECO14948 347 aaPredicted RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 RNF13O43567 381 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 B3GALNT1O75752 331 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 HLA-DPB1P04440 258 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 F13BP05160 661 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 APEX1P27695 318 aaKnown RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 SHC1P29353 583 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ETV6P41212 452 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 NR0B1P51843 470 aaKnown RBP9.72□□□□□ -0.85
CUX1-221ENST00000622516 TPTEP56180 551 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ZNF85Q03923 595 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 KLHL26Q53HC5 615 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 OGFOD3Q6PK18 319 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 LINC00114Q6XXX2 140 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 OR6K6Q8NGW6 343 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SLC2A12Q8TD20 617 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SGTBQ96EQ0 304 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 NUDT9Q9BW91 350 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SYNDIG1Q9H7V2 258 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ASB6Q9NWX5 421 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 UGT2A1Q9Y4X1 527 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ASPMQ8IZT6 3477 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 A0A087WUJ7 227 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 IQCMA0A1B0GVH7 501 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SLC22A31A6NKX4 558 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 H3BMH7 237 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SNPHO15079 494 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 ICOSLGO75144 302 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 UTS2O95399 124 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 TFP02787 698 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 MST1P26927 711 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 SLC6A6P31641 620 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 AQP2P41181 271 aa9.72□□□□□ -0.85
CUX1-221ENST00000622516 AFF3P51826 1226 aaKnown RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms