RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 IGF2P01344 180 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 ITGB2P05107 769 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 SAGP10523 405 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 MAKP20794 623 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 MAP2K6P52564 334 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 FOXK1P85037 733 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 SELENBP1Q13228 472 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.25□□□□□ -0.29
VRK3-212ENST00000596814 GLYR1Q49A26 553 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 NHSL2Q5HYW2 709 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 C3orf33Q6P1S2 294 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 C5orf46Q6UWT4 87 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 CD300LDQ6UXZ3 194 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 TMPRSS11FQ6ZWK6 438 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 ZFP62Q8NB50 900 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 FAM98AQ8NCA5 519 aaKnown RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 FAM83FQ8NEG4 500 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 OR14L1PQ8NHC6 308 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 STK35Q8TDR2 534 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 CYGBQ8WWM9 190 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 SLC39A7Q92504 469 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 MBOAT4Q96T53 435 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 GABARAPL3Q9BY60 117 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 OR2B2Q9GZK3 357 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 RAB26Q9ULW5 256 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 FREM3P0C091 2139 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 LAMA5O15230 3695 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 ZC3H12DA2A288 527 aaKnown RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 HTR3EA5X5Y0 456 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 FAM166BA8MTA8 275 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 EFCAB9A8MZ26 197 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 CDC42EP2O14613 210 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 ZNF208O43345 1280 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 TRAPPC6AO75865 159 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 GLSO94925 669 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 PDGFAP04085 211 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 OSMP13725 252 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 ELK4P28324 431 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 HYAL4Q2M3T9 481 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 TMEM44Q2T9K0 475 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 C6orf52Q5T4I8 152 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 WLSQ5T9L3 541 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 YRDCQ86U90 279 aaKnown RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 DHRSXQ8N5I4 330 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 DDIT4LQ96D03 193 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 KTI12Q96EK9 354 aaPredicted RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 PIGQQ9BRB3 760 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 OR11A1Q9GZK7 315 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 REV1Q9UBZ9 1251 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 MRPS18CQ9Y3D5 142 aaKnown RBP13.25□□□□□ -0.29
VRK3-212ENST00000596814 AP4B1Q9Y6B7 739 aa13.25□□□□□ -0.29
VRK3-212ENST00000596814 TRAV36DV7A0A075B6V5 113 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 OR2M5A3KFT3 312 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 ACOT7O00154 380 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 NPIPB7O75200 414 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 SOX14O95416 240 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 AHSA1O95433 338 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 IL11P20809 199 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 RPS5P46782 204 aaKnown RBP13.24□□□□□ -0.29
VRK3-212ENST00000596814 ESRRGP62508 458 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 NPRL3Q12980 569 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 ZNF169Q14929 603 aaPredicted RBP13.24□□□□□ -0.29
VRK3-212ENST00000596814 ZNF74Q16587 644 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 C1orf140Q5VVS0 124 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 RASSF6Q6ZTQ3 369 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 SLC46A3Q7Z3Q1 461 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 SLC22A16Q86VW1 577 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 TMEM251Q8N6I4 163 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 C10orf53Q8N6V4 93 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 ZNF555Q8NEP9 628 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 ATP6V1C2Q8NEY4 427 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 SLC25A43Q8WUT9 341 aaPredicted RBP13.24□□□□□ -0.29
VRK3-212ENST00000596814 ABHD17AQ96GS6 310 aa13.24□□□□□ -0.29
VRK3-212ENST00000596814 UBL7Q96S82 380 aaPredicted RBP13.24□□□□□ -0.29
VRK3-212ENST00000596814 CACNA1GO43497 2377 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 UNC119BA6NIH7 251 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 LRRN3E7EW58 273 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 H3BML4 177 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 H3BN98 237 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 EFNA2O43921 213 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 OR7A10O76100 309 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 CH25HO95992 272 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 HPNP05981 417 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 PEPDP12955 493 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 FUT1P19526 365 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 POLR2IP36954 125 aaKnown RBP13.23□□□□□ -0.29
VRK3-212ENST00000596814 CAPGP40121 348 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 MAGEA5P43359 124 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 SLC36A3Q495N2 470 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 SYT14P1Q58G82 188 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 ZNF620Q6ZNG0 422 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 OR13C2Q8NGS9 318 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 FANK1Q8TC84 345 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 TFAP2CQ92754 450 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 SFXN2Q96NB2 322 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 Q9H521 79 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 TMEM185BQ9H7F4 350 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 FAM118AQ9NWS6 357 aa13.23□□□□□ -0.29
VRK3-212ENST00000596814 QPCTLQ9NXS2 382 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms