RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TRAV36DV7A0A075B6V5 113 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 H3BNX3 289 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 TRMUO75648 421 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 SNAP29O95721 258 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 CRYABP02511 175 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 C8BP07358 591 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 NID1P14543 1247 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ENPP1P22413 925 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ELAVL4P26378 380 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 MVKQ03426 396 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ZNF846Q147U1 533 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 HBMQ6B0K9 141 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 PODNL1Q6PEZ8 512 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 AAED1Q7RTV5 226 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 PGAM5Q96HS1 289 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 SLC41A2Q96JW4 573 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 LRR1Q96L50 414 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 DEFB127Q9H1M4 99 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 A8MVM7 634 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 CD79BP40259 229 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 COL28A1Q2UY09 1125 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ZNF613Q6PF04 617 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ANKRD37Q7Z713 158 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 YRDCQ86U90 279 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 P2RY8Q86VZ1 359 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 SYT14Q8NB59 555 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 NRTNQ99748 197 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ULBP2Q9BZM5 246 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 PRMT8Q9NR22 394 aaPredicted RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 AIREO43918 545 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 SLC43A1O75387 559 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 WDPCPO95876 746 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 IGHG1P01857 330 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 G0S2P27469 103 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ZBED5Q49AG3 693 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 DDI2Q5TDH0 399 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 ZNF585AQ6P3V2 769 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 SHFQ7M4L6 423 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 CHST4Q8NCG5 386 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 MUCL1Q96DR8 90 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 CNN2Q99439 309 aaKnown RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 RAB33BQ9H082 229 aa9.07□□□□□ -0.96
LIG3-216ENST00000593099 NKX1-2Q9UD57 310 aaPredicted RBP9.07□□□□□ -0.96
LIG3-216ENST00000593099 A0A1W2PPV9 198 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 C19orf67A6NJJ6 358 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 PHYHO14832 338 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ARL6IP5O75915 188 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 NADKO95544 446 aaPredicted RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 ATP1B1P05026 303 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 THBS1P07996 1170 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 CD79AP11912 226 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 RAB4AP20338 218 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 RPS18P62269 152 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 ERVK-25P63136 954 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 TIGD6Q17RP2 521 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 SLC25A25Q6KCM7 469 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 SLC18B1Q6NT16 456 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 PLBD1Q6P4A8 553 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 OLIG3Q7RTU3 272 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 FOXRED2Q8IWF2 684 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 FTMTQ8N4E7 242 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 SPERTQ8NA61 448 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ZNF675Q8TD23 568 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 NUDT8Q8WV74 236 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 APOBEC4Q8WW27 367 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 SCARF2Q96GP6 870 aaPredicted RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 SECISBP2Q96T21 854 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 RLIMQ9NVW2 624 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 HSPA12AO43301 675 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 SSNA1O43805 119 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ATE1O95260 518 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 FUCA1P04066 466 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 LYNP07948 512 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 BMP2P12643 396 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 RIDAP52758 137 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 SIRPAP78324 504 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 TIAL1Q01085 375 aaKnown RBP eCLIP9.06□□□□□ -0.96
LIG3-216ENST00000593099 SLC3A1Q07837 685 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 CLVS2Q5SYC1 327 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 RNF220Q5VTB9 566 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 SLC6A19Q695T7 634 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 PEG10Q86TG7 708 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 SPARTQ8N0X7 666 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 GALNT16Q8N428 558 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ZFAND2BQ8WV99 257 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 VPS25Q9BRG1 176 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 UFSP2Q9NUQ7 469 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ZNF99A8MXY4 864 aaPredicted RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 HMGN4O00479 90 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 TBX19O60806 448 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 APOBEC1P41238 236 aaKnown RBP9.06□□□□□ -0.96
LIG3-216ENST00000593099 GLO1Q04760 184 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 PRTGQ2VWP7 1150 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ACER2Q5QJU3 275 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 LRFN4Q6PJG9 635 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 RNF165Q6ZSG1 346 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ASRGL1Q7L266 308 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 ACBD7Q8N6N7 88 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 LRFN3Q9BTN0 628 aa9.06□□□□□ -0.96
LIG3-216ENST00000593099 OR52D1Q9H346 318 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms