RNA–Protein interactions for RNA: ENST00000584186.1

CDK5RAP3-233, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 3

Gene CDK5RAP3, Length 482 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-233	ENST00000584186	APH1A	Q96BI3	265 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	TMEM19	Q96HH6	336 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	POTEKP	Q9BYX7	375 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	PAIP1	Q9H074	479 aa	Known RBP	12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ESRP2	Q9H6T0	727 aa	Known RBP	12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	NGB	Q9NPG2	151 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	DLL4	Q9NR61	685 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CCDC167	Q9P0B6	97 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZNF232	Q9UNY5	417 aa		12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZNF443	Q9Y2A4	671 aa	Predicted RBP	12.06	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	C2CD3	Q4AC94	2353 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	IGKV3D-15	A0A087WSY6	115 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186		A0A0G2JPF8	293 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZC3H12D	A2A288	527 aa	Known RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HNRNPCL2	B2RXH8	293 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HNRNPCL3	B7ZW38	293 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	C5orf58	C9J3I9	102 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CLIC1	O00299	241 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	GPR171	O14626	319 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HS3ST1	O14792	307 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZNF208	O43345	1280 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	DNPH1	O43598	174 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HNRNPCL1	O60812	293 aa	Known RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	RAMP1	O60894	148 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	TGDS	O95455	350 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CD3E	P07766	207 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	NUDT7	P0C024	238 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HNRNPCL4	P0DMR1	293 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	FOSL1	P15407	271 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	NCF2	P19878	526 aa	Predicted RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	IGHV1-2	P23083	117 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ADSL	P30566	484 aa	Predicted RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	COPZ1	P61923	177 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	SLC35A1	P78382	337 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	PDK3	Q15120	406 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	RGN	Q15493	299 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	YTHDF3	Q7Z739	585 aa	Known RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CLIP4	Q8N3C7	705 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	TMEM171	Q8WVE6	324 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	MUCL1	Q96DR8	90 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	TMEM204	Q9BSN7	226 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	NAA11	Q9BSU3	229 aa	Predicted RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	THUMPD1	Q9NXG2	353 aa	Known RBP	12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	TRAPPC4	Q9Y296	219 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	RNF115	Q9Y4L5	304 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	DSPP	Q9NZW4	1301 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ACAN	P16112	2415 aa		12.05	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186		A0A096LPI6	279 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CIB4	A0PJX0	185 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CCT8L1P	A6NM43	557 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	FAAH	O00519	579 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	EIF1B	O60739	113 aa	Known RBP	12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	MRPL33	O75394	65 aa	Known RBP	12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	THBS1	P07996	1170 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	IMPDH2	P12268	514 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	PRG2	P13727	222 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	GGT1	P19440	569 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	BSPH1	Q075Z2	132 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	BNIP2	Q12982	314 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CEACAM7	Q14002	265 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	PPA1	Q15181	289 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZNF311	Q5JNZ3	666 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	FBXW9	Q5XUX1	488 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CASP12	Q6UXS9	341 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HDX	Q7Z353	690 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	SERPINA11	Q86U17	422 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	FUNDC1	Q8IVP5	155 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	LRRC75A-AS1	Q8N1F1	130 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	THOC1	Q96FV9	657 aa	Known RBP	12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	C18orf12	Q96KH6	178 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186		Q96MF0	132 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	SMR3A	Q99954	134 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	USB1	Q9BQ65	265 aa	Known RBP	12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CCDC28B	Q9BUN5	200 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	RAD21L1	Q9H4I0	556 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ARMC7	Q9H6L4	198 aa		12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	INTS9	Q9NV88	658 aa	Known RBP	12.04	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	FREM1	Q5H8C1	2179 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	RAD51D	O75771	328 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	CNOT4	O95628	575 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	GPI	P06744	558 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	NTF4	P34130	210 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	IDUA	P35475	653 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ACAA2	P42765	397 aa	Known RBP	12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	PTH2R	P49190	550 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	MAP2K6	P52564	334 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	H3F3A	P84243	136 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	HOXC5	Q00444	222 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	FAP	Q12884	760 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	OR7A5	Q15622	319 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	AGK	Q53H12	422 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	NCMAP	Q5T1S8	102 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	RNF220	Q5VTB9	566 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	WBP2NL	Q6ICG8	309 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ADAM5	Q6NVV9	412 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	BLOC1S3	Q6QNY0	202 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186		Q71RC1	249 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZNF433	Q8N7K0	673 aa	Predicted RBP	12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	ZNF611	Q8N823	705 aa		12.03	□□□□□ -0.48
CDK5RAP3-233	ENST00000584186	KBTBD8	Q8NFY9	601 aa		12.03	□□□□□ -0.48

Retrieved 100 of 20,778 RNA–protein pairs in 31 ms