RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-222	ENST00000582792	RABEP2	Q9H5N1	569 aa		11.95	□□□□□ -0.5
SS18-222	ENST00000582792	DCTN4	Q9UJW0	460 aa		11.95	□□□□□ -0.5
SS18-222	ENST00000582792	POU2F3	Q9UKI9	436 aa		11.95	□□□□□ -0.5
SS18-222	ENST00000582792	DTNA	Q9Y4J8	743 aa		11.95	□□□□□ -0.5
SS18-222	ENST00000582792	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	11.95	□□□□□ -0.5	1e-8	■■■■□ 23.5
SS18-222	ENST00000582792		A0A0G2JND7	137 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	PRSS51	A0A1B0GVH4	220 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	GMNC	A6NCL1	334 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	NPIPB9	F8W1W9	429 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	SCN2B	O60939	215 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	H6PD	O95479	791 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	IL6	P05231	212 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	IGHV4-31	P0DP07	118 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF16	P17020	682 aa	Predicted RBP	11.94	□□□□□ -0.5
SS18-222	ENST00000582792	PTAFR	P25105	342 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	IL12A	P29459	219 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	S100A3	P33764	101 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	SPOCK1	Q08629	439 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	SQLE	Q14534	574 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	QPRT	Q15274	297 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	FBXW9	Q5XUX1	488 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	SLC22A25	Q6T423	547 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	KLHL17	Q6TDP4	642 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	B3GLCT	Q6Y288	498 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	TOR1AIP2	Q8NFQ8	470 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	C10orf105	Q8TEF2	133 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	PROX1	Q92786	737 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	TEX37	Q96LM6	180 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	OR5B2	Q96R09	309 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	C19orf24	Q9BVV8	132 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	TMEM120A	Q9BXJ8	343 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	ACTRT3	Q9BYD9	372 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	NSRP1	Q9H0G5	558 aa	Known RBP	11.94	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF385D	Q9H6B1	395 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	BTNL2	Q9UIR0	455 aa		11.94	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF264	O43296	627 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	EIF4E2	O60573	245 aa	Known RBP	11.93	□□□□□ -0.5
SS18-222	ENST00000582792	RAD51D	O75771	328 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	UBL4A	P11441	157 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	CD40	P25942	277 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	FABP6	P51161	128 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF83	P51522	516 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	GNGT1	P63211	74 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	CBFB	Q13951	182 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	PGS1	Q32NB8	556 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	SPANXN4	Q5MJ08	99 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	ABLIM2	Q6H8Q1	611 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF544	Q6NX49	715 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	TMCO5A	Q8N6Q1	288 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF614	Q8N883	585 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	OR52N5	Q8NH56	324 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	SFXN5	Q8TD22	340 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	ADAMTS15	Q8TE58	950 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	MOAP1	Q96BY2	351 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	EMC3	Q9P0I2	261 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	SLC25A15	Q9Y619	301 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	KCNE3	Q9Y6H6	103 aa		11.93	□□□□□ -0.5
SS18-222	ENST00000582792	IGKV3D-15	A0A087WSY6	115 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	CIB4	A0PJX0	185 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	LMX1B	O60663	402 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	DNAJA2	O60884	412 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	PGR	P06401	933 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	KRT16	P08779	473 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	CSF3	P09919	207 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	DRD4	P21917	467 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	USF1	P22415	310 aa	Predicted RBP	11.92	□□□□□ -0.5
SS18-222	ENST00000582792	CCT3	P49368	545 aa	Known RBP	11.92	□□□□□ -0.5
SS18-222	ENST00000582792	DIO1	P49895	249 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	CCR4	P51679	360 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	POLR2J	P52435	117 aa	Known RBP	11.92	□□□□□ -0.5
SS18-222	ENST00000582792	GYS2	P54840	703 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	PHC1	P78364	1004 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	CHRNE	Q04844	493 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	TP53BP2	Q13625	1128 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	PDK3	Q15120	406 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	FAM174B	Q3ZCQ3	159 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	TIGD2	Q4W5G0	525 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	OR4F3	Q6IEY1	312 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	DEPDC4	Q8N2C3	294 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	UBE2J2	Q8N2K1	259 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	ARIH2OS	Q8N7S6	290 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	OR56A1	Q8NGH5	318 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	TSPEAR	Q8WU66	669 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	C10orf82	Q8WW14	230 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	ST8SIA1	Q92185	356 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	THOC1	Q96FV9	657 aa	Known RBP	11.92	□□□□□ -0.5
SS18-222	ENST00000582792	CCDC115	Q96NT0	180 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	INPP5K	Q9BT40	448 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	QRSL1	Q9H0R6	528 aa	Known RBP	11.92	□□□□□ -0.5
SS18-222	ENST00000582792	GPATCH2	Q9NW75	528 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	PCDHGB4	Q9UN71	923 aa		11.92	□□□□□ -0.5
SS18-222	ENST00000582792	FAF1	Q9UNN5	650 aa	Predicted RBP	11.92	□□□□□ -0.5
SS18-222	ENST00000582792	MALRD1	Q5VYJ5	2156 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792	SERINC4	A6NH21	518 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792	CCT8L1P	A6NM43	557 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792	ZNF716	A6NP11	495 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792		M0R1B8	84 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792	HAX1	O00165	279 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792	SLC22A2	O15244	555 aa		11.91	□□□□□ -0.5
SS18-222	ENST00000582792	CFLAR	O15519	480 aa		11.91	□□□□□ -0.5

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