RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 Q6ZPB1 254 aaPredicted RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 MBOAT2Q6ZWT7 520 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 CPEB2Q7Z5Q1 589 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 COMTD1Q86VU5 262 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 DOLPP1Q86YN1 238 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 RNF113BQ8IZP6 322 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 GHDCQ8N2G8 530 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 FAM98AQ8NCA5 519 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 FAM81AQ8TBF8 368 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 TP53INP1Q96A56 240 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 EFHD2Q96C19 240 aaPredicted RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 MPP4Q96JB8 637 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 NIPSNAP1Q9BPW8 284 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 ENKD1Q9H0I2 346 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 NXF5Q9H1B4 397 aaKnown RBP9.25□□□□□ -0.93
SS18-207ENST00000577636 CCNB1IP1Q9NPC3 277 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 SLC7A7Q9UM01 511 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 TMEM5Q9Y2B1 443 aa9.25□□□□□ -0.93
SS18-207ENST00000577636 NUP214P35658 2090 aaPredicted RBP9.24□□□□□ -0.93
SS18-207ENST00000577636 SMIM31A0A1B0GVY4 71 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 FAM90A27PA6NNH2 459 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 MAN1A2O60476 641 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 SMNDC1O75940 238 aaKnown RBP eCLIP9.24□□□□□ -0.93
SS18-207ENST00000577636 IGKV1D-16P01601 117 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CLPSP04118 112 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CCDC159P0C7I6 412 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 GKN3PP0CG01 181 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 UBL4AP11441 157 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 TBXA2RP21731 343 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ELK4P28324 431 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 POLR2IP36954 125 aaKnown RBP9.24□□□□□ -0.93
SS18-207ENST00000577636 ADH7P40394 386 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 TMED10P49755 219 aaKnown RBP9.24□□□□□ -0.93
SS18-207ENST00000577636 HLCSP50747 726 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 GPR143P51810 404 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ZNF136P52737 540 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 PNLIPRP2P54317 469 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CXCR4P61073 352 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ISL1P61371 349 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 RNF4P78317 190 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 HOXC5Q00444 222 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 EFR3AQ14156 821 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 SEC23BQ15437 767 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 C1orf94Q6P1W5 598 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ULK3Q6PHR2 472 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 KLHL17Q6TDP4 642 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 C9orf40Q8IXQ3 194 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 TMCO5AQ8N6Q1 288 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ZNF321PQ8N8H1 164 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 TMEM178AQ8NBL3 297 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 BPIFB6Q8NFQ5 453 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 OR8K3Q8NH51 312 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 TEX47Q8TBZ9 253 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CNOT9Q92600 299 aaKnown RBP9.24□□□□□ -0.93
SS18-207ENST00000577636 NRGNQ92686 78 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ADIPOR1Q96A54 375 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 Q96MT0 163 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 ADOQ96SZ5 270 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 WFDC6Q9BQY6 131 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 FUZQ9BT04 418 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 TBL1XR1Q9BZK7 514 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CDCP1Q9H5V8 836 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 HHATLQ9HCP6 504 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 MAN2C1Q9NTJ4 1040 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CLN6Q9NWW5 311 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 DNAJB12Q9NXW2 375 aaKnown RBP9.24□□□□□ -0.93
SS18-207ENST00000577636 KCNE5Q9UJ90 142 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 MED31Q9Y3C7 131 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 CHST2Q9Y4C5 530 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 PCDHGB5Q9Y5G0 923 aa9.24□□□□□ -0.93
SS18-207ENST00000577636 SETD2Q9BYW2 2564 aaPredicted RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 A0A087WUU8 490 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 TRBV11-1A0A0K0K1C0 115 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 CENPVL1A0A0U1RR11 272 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 A0A1W2PQ72 361 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 DPPA5A6NC42 116 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 NKX2-6A6NCS4 301 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 A6NHS1 94 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 E9PLN8 166 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 NPIPB9F8W1W9 429 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 ZNF264O43296 627 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 CHP2O43745 196 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 CDC40O60508 579 aaKnown RBP eCLIP9.23□□□□□ -0.93
SS18-207ENST00000577636 FAM20BO75063 409 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 ZFAND5O76080 213 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 TPOP07202 933 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 SP1P08047 785 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 LINGO3P0C6S8 592 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 NAGAP17050 411 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 HOXB4P17483 251 aaPredicted RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 FPR3P25089 353 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 RBM34P42696 430 aaKnown RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 SLC6A8P48029 635 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 CCR4P51679 360 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 TEKQ02763 1124 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 TSPAN31Q12999 210 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 CDK5R2Q13319 367 aa9.23□□□□□ -0.93
SS18-207ENST00000577636 MAD2L1BPQ15013 274 aaPredicted RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 PTGES3Q15185 160 aaKnown RBP9.23□□□□□ -0.93
SS18-207ENST00000577636 EXT1Q16394 746 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms