RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ATAD3CQ5T2N8 411 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 IDNKQ5T6J7 187 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 C19orf18Q8NEA5 215 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 C17orf47Q8NEP4 570 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 OR52E2Q8NGJ4 325 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 OR4K13Q8NH42 304 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 ABHD4Q8TB40 342 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 KCTD12Q96CX2 325 aaKnown RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 SGTBQ96EQ0 304 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 MMABQ96EY8 250 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 PGLYRP3Q96LB9 341 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 UBL7Q96S82 380 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 TMEM43Q9BTV4 400 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 PLCL2Q9UPR0 1127 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 OR10H1Q9Y4A9 318 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 NOX1Q9Y5S8 564 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CEP290O15078 2479 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 TMEM131Q92545 1883 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 IGHV1OR15-9A0A0B4J2B8 117 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 HTR3EA5X5Y0 456 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 HMX3A6NHT5 357 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 LILRA5A6NI73 299 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CHURC1-FNTBB4DL54 471 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 GNB5O14775 395 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CLPSP04118 112 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 NME1P15531 152 aaKnown RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 ELK1P19419 428 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 POU3F3P20264 500 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 MYL9P24844 172 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 FNTBP49356 437 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CENPAP49450 140 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 SLC3A1Q07837 685 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 CLPPQ16740 277 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 FAM27D1Q5T7N8 215 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 DMKNQ6E0U4 476 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 SSX6Q7RTT6 188 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 PXKQ7Z7A4 578 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 TPRA1Q86W33 373 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 UBE2J2Q8N2K1 259 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 LRRC17Q8N6Y2 441 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 FAM98AQ8NCA5 519 aaKnown RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 SDR9C7Q8NEX9 313 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 OR51Q1Q8NH59 317 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 ENKURQ8TC29 256 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 ZNF486Q96H40 463 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 ZC3HAV1LQ96H79 300 aaKnown RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 ST6GAL2Q96JF0 529 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 MOGAT1Q96PD6 335 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 SLC38A3Q99624 504 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 KCNJ15Q99712 375 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 ZNF576Q9H609 170 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 RNF121Q9H920 327 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 KLHL21Q9UJP4 597 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 TMEM184BQ9Y519 407 aaPredicted RBP9.25□□□□□ -0.93
VPS53-220ENST00000576149 IER3IP1Q9Y5U9 82 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 MTCH2Q9Y6C9 303 aa9.25□□□□□ -0.93
VPS53-220ENST00000576149 FAM25AB3EWG3 89 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 FAM25CB3EWG5 89 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 FAM25GB3EWG6 89 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 MCIDASD6RGH6 385 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 LRRN3E7EW58 273 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 IFNA16P05015 189 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 GALNSP34059 522 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 THBS2P35442 1172 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 MAP2K3P46734 347 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 NRG3P56975 720 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 GABREP78334 506 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 GGTLC2Q14390 218 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 KLHL26Q53HC5 615 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 RPTNQ6XPR3 784 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 DPY19L2P2Q6ZN68 376 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 PRR23CQ6ZRP0 262 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 TRILQ7L0X0 811 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 CEACAM19Q7Z692 300 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 GKN2Q86XP6 184 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 METTL27Q8N6F8 245 aaPredicted RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 ZSCAN1Q8NBB4 408 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 TSTD1Q8NFU3 115 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 OR5J2Q8NH18 312 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 LMX1AQ8TE12 382 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 ZMYND19Q96E35 227 aaPredicted RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 TPSD1Q9BZJ3 242 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 LRRN3Q9H3W5 708 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 RBFOX1Q9NWB1 397 aaKnown RBP9.24□□□□□ -0.93
VPS53-220ENST00000576149 PFDN2Q9UHV9 154 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 A0A0B4J293 547 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 IGHV5-51A0A0C4DH38 117 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 H0YIG0 161 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 ZNF217O75362 1048 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 PPM1BO75688 479 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 TFP02787 698 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 OR2T7P0C7T2 308 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 FAM157BP0CG42 384 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 PYCR1P32322 319 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 ACVR1BP36896 505 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 QPRTQ15274 297 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 BCL2A1Q16548 175 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 ACSM3Q53FZ2 586 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 TMEM164Q5U3C3 297 aa9.24□□□□□ -0.93
VPS53-220ENST00000576149 SFXN4Q6P4A7 337 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms