RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 DCKP27707 260 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CENPAP49450 140 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 SSR4P51571 173 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CCR4P51679 360 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ZNF41P51814 821 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 EFNA3P52797 238 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 TMBIM6P55061 237 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 EFNB1P98172 346 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CRYZQ08257 329 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 RAB40BQ12829 278 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CHAF1BQ13112 559 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 DNASE1L3Q13609 305 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 C1DQ13901 141 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 TBCEQ15813 527 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 PGGHGQ32M88 737 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 NADK2Q4G0N4 442 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CCDC157Q569K6 752 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 NXNL2Q5VZ03 156 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 H3F3CQ6NXT2 135 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FAM199XQ6PEV8 388 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 KIRREL2Q6UWL6 708 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 DHRS13Q6UX07 377 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ASCL5Q7RTU5 278 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 RPS19BP1Q86WX3 136 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 TCEANCQ8N8B7 351 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CNIH3Q8TBE1 160 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FANK1Q8TC84 345 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 GRHL3Q8TE85 626 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 DUSP19Q8WTR2 217 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CT55Q8WUE5 264 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ASB15Q8WXK1 588 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 HGDQ93099 445 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 SPACA9Q96E40 222 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 MRPL48Q96GC5 212 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 TMEM80Q96HE8 168 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 MRGPRX4Q96LA9 322 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CDCA4Q9BXL8 241 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 OR52D1Q9H346 318 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 METTL7AQ9H8H3 244 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FKRPQ9H9S5 495 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 NANSQ9NR45 359 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 INPP5EQ9NRR6 644 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 SACM1LQ9NTJ5 587 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FKBP14Q9NWM8 211 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 TAS2R10Q9NYW0 307 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 KLRF1Q9NZS2 232 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 FLRT3Q9NZU0 649 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 PPP4R1LQ9P1A2 415 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 RSL24D1Q9UHA3 163 aaKnown RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 ZNF229Q9UJW7 825 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 ERGIC3Q9Y282 383 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CORINQ9Y5Q5 1042 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 COMMD3-BMI1R4GMX3 469 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 NUP214P35658 2090 aaPredicted RBP7.27□□□□□ -1.25
VPS39-213ENST00000570062 WDR87Q6ZQQ6 2873 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 GVINP1Q7Z2Y8 2422 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 CABIN1Q9Y6J0 2220 aa7.27□□□□□ -1.25
VPS39-213ENST00000570062 GPR179Q6PRD1 2367 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ARID1BQ8NFD5 2236 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 TNFSF12-TNFSF13A0A0A6YY99 330 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 CCDC160A6NGH7 325 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SLC22A31A6NKX4 558 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ENO4A6NNW6 628 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 RIIAD1A6NNX1 92 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 WWP2O00308 870 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ETV2O00321 342 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 SOCS6O14544 535 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SURF4O15260 269 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 TRIM3O75382 744 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 ITGA10O75578 1167 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 OR2J2O76002 312 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SEC14L2O76054 403 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SOX14O95416 240 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 NADKO95544 446 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 TP53P04637 393 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 FTH1P19P0C7X4 201 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ZNF3P17036 446 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 MYL12AP19105 171 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 TGM1P22735 817 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 EPHA2P29317 976 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 TACR3P29371 465 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 NOS3P29474 1203 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 FMO3P31513 532 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 DLSTP36957 453 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ETV5P41161 510 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 CASRP41180 1078 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SLC15A1P46059 708 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 GPR4P46093 362 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 MLF1P58340 268 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ZNF117Q03924 483 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 LGALS3BPQ08380 585 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 FOXD4Q12950 439 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 CD226Q15762 336 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 ZNF791Q3KP31 576 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 TIMM50Q3ZCQ8 353 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 GLYR1Q49A26 553 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 SLC25A53Q5H9E4 307 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SYT6Q5T7P8 510 aaPredicted RBP7.26□□□□□ -1.25
VPS39-213ENST00000570062 FAM69BQ5VUD6 431 aa7.26□□□□□ -1.25
VPS39-213ENST00000570062 SLC22A10Q63ZE4 541 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms