RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 GNLYP22749 145 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 SFTPDP35247 375 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 PTGS2P35354 604 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 HTR3AP46098 478 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 H3F3AP84243 136 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 MYBPHQ13203 477 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 GUSBP1Q15486 140 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TMEM176BQ3YBM2 270 aaPredicted RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 ACSF3Q4G176 576 aaPredicted RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 SYT14P1Q58G82 188 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 ALG10BQ5I7T1 473 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 POMZP3Q6PJE2 187 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 PRICKLE2Q7Z3G6 844 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 SLC46A3Q7Z3Q1 461 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TMEM179BQ7Z7N9 219 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 CD163Q86VB7 1156 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 RANBP3LQ86VV4 465 aaPredicted RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 ZDHHC21Q8IVQ6 265 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 OR4C15Q8NGM1 316 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 SLC7A13Q8TCU3 470 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TMEM255BQ8WV15 326 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 DNAJA4Q8WW22 397 aaPredicted RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 TAAR8Q969N4 342 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 KTI12Q96EK9 354 aaPredicted RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 DNAJA3Q96EY1 480 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 SLC47A1Q96FL8 570 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 KLHL15Q96M94 604 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 UCN2Q96RP3 112 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TMEM43Q9BTV4 400 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 POLR2J2Q9GZM3 115 aaKnown RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 POLR2J3Q9H1A7 115 aaKnown RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 LDAHQ9H6V9 325 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 NMNAT1Q9HAN9 279 aaPredicted RBP8.33□□□□□ -1.08
VPS35-211ENST00000569950 C20orf141Q9NUB4 165 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 SEC14L4Q9UDX3 406 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 TINAGQ9UJW2 476 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 SLC7A7Q9UM01 511 aa8.33□□□□□ -1.08
VPS35-211ENST00000569950 PRR14LQ5THK1 2151 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 A0A087WUU8 490 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 TRBV4-1A0A0J9YWV2 114 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 A0A1W2PRQ8 180 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 CLEC18AA5D8T8 446 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 ERICH4A6NGS2 130 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 LIPT2A6NK58 231 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 LRRN3E7EW58 273 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 TNFSF11O14788 317 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 BCKDKO14874 412 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 SMAD9O15198 467 aaKnown RBP8.32□□□□□ -1.08
VPS35-211ENST00000569950 SEC14L5O43304 696 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 KLF4O43474 513 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 FKBP6O75344 327 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 BGLAPP02818 100 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 GPIP06744 558 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 TSPAN19P0C672 248 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 RAP2AP10114 183 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 THRBP10828 461 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 UMPSP11172 480 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 PLA2G2AP14555 144 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 RHCEP18577 417 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 CCNA2P20248 432 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 POU3F2P20265 443 aaPredicted RBP8.32□□□□□ -1.08
VPS35-211ENST00000569950 CA7P43166 264 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 HMGA2P52926 109 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 COPZ1P61923 177 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 DGCR6Q14129 220 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 C1orf146Q5VVC0 180 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 ZNF770Q6IQ21 691 aaPredicted RBP8.32□□□□□ -1.08
VPS35-211ENST00000569950 HMBOX1Q6NT76 420 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 C3orf33Q6P1S2 294 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 AAGABQ6PD74 315 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 TBPL2Q6SJ96 375 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 CLEC18BQ6UXF7 455 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 C3P1Q6ZMU1 363 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 ESPNLQ6ZVH7 1005 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 FKBP9P1Q75LS8 142 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 WDFY1Q8IWB7 410 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 UBQLNLQ8IYU4 475 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 CLEC18CQ8NCF0 446 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 NAXEQ8NCW5 288 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 OR10D3Q8NH80 312 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 OR2V1Q8NHB1 315 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 ZPLD1Q8TCW7 415 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 SARAFQ96BY9 339 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 MOGAT1Q96PD6 335 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 PIP5K1AQ99755 562 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 GPA33Q99795 319 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 CHID1Q9BWS9 393 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 POTEKPQ9BYX7 375 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 CACYBPQ9HB71 228 aaKnown RBP8.32□□□□□ -1.08
VPS35-211ENST00000569950 TMEM27Q9HBJ8 222 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 SLC13A4Q9UKG4 626 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 LYVE1Q9Y5Y7 322 aa8.32□□□□□ -1.08
VPS35-211ENST00000569950 ZNF716A6NP11 495 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 CLCA1A8K7I4 914 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 A8MVM7 634 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 EIF1AYO14602 144 aaKnown RBP8.31□□□□□ -1.08
VPS35-211ENST00000569950 CXCL13O43927 109 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 ENTPD5O75356 428 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 AQP8O94778 261 aa8.31□□□□□ -1.08
VPS35-211ENST00000569950 PMS2P2O95744 297 aa8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms