RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 GABRA6Q16445 453 aa15.06■□□□□ 0
CLN3-216ENST00000565316 NRF1Q16656 503 aa15.06■□□□□ 0
CLN3-216ENST00000565316 GPAT3Q53EU6 434 aa15.06■□□□□ 0
CLN3-216ENST00000565316 TNFAIP8L3Q5GJ75 292 aa15.06■□□□□ 0
CLN3-216ENST00000565316 AGAP6Q5VW22 663 aa15.06■□□□□ 0
CLN3-216ENST00000565316 C11orf71Q6IPW1 123 aa15.06■□□□□ 0
CLN3-216ENST00000565316 TMEM108Q6UXF1 575 aa15.06■□□□□ 0
CLN3-216ENST00000565316 HMGN2P46Q86SG4 172 aa15.06■□□□□ 0
CLN3-216ENST00000565316 RNF130Q86XS8 419 aa15.06■□□□□ 0
CLN3-216ENST00000565316 UBE2J2Q8N2K1 259 aa15.06■□□□□ 0
CLN3-216ENST00000565316 ANKFN1Q8N957 763 aa15.06■□□□□ 0
CLN3-216ENST00000565316 PMM1Q92871 262 aa15.06■□□□□ 0
CLN3-216ENST00000565316 HS6ST2Q96MM7 605 aa15.06■□□□□ 0
CLN3-216ENST00000565316 AMBRA1Q9C0C7 1298 aa15.06■□□□□ 0
CLN3-216ENST00000565316 OSGIN1Q9UJX0 560 aa15.06■□□□□ 0
CLN3-216ENST00000565316 TMED7-TICAM2A0A0A6YYA0 188 aa15.05■□□□□ -0
CLN3-216ENST00000565316 CIB4A0PJX0 185 aa15.05■□□□□ -0
CLN3-216ENST00000565316 CCDC154A6NI56 674 aa15.05■□□□□ -0
CLN3-216ENST00000565316 CCT8L1PA6NM43 557 aa15.05■□□□□ -0
CLN3-216ENST00000565316 AP3D1O14617 1153 aa15.05■□□□□ -0
CLN3-216ENST00000565316 TLX2O43763 284 aaPredicted RBP15.05■□□□□ -0
CLN3-216ENST00000565316 EIF1BO60739 113 aaKnown RBP15.05■□□□□ -0
CLN3-216ENST00000565316 CHRM4P08173 479 aa15.05■□□□□ -0
CLN3-216ENST00000565316 ITGA5P08648 1049 aa15.05■□□□□ -0
CLN3-216ENST00000565316 ALDOCP09972 364 aaKnown RBP15.05■□□□□ -0
CLN3-216ENST00000565316 IMPDH2P12268 514 aa15.05■□□□□ -0
CLN3-216ENST00000565316 BGNP21810 368 aa15.05■□□□□ -0
CLN3-216ENST00000565316 CD40P25942 277 aa15.05■□□□□ -0
CLN3-216ENST00000565316 TTKP33981 857 aa15.05■□□□□ -0
CLN3-216ENST00000565316 SLC1A3P43003 542 aa15.05■□□□□ -0
CLN3-216ENST00000565316 MAGEA8P43361 318 aa15.05■□□□□ -0
CLN3-216ENST00000565316 POLR2HP52434 150 aaKnown RBP15.05■□□□□ -0
CLN3-216ENST00000565316 MAP2K6P52564 334 aa15.05■□□□□ -0
CLN3-216ENST00000565316 OR2B6P58173 313 aa15.05■□□□□ -0
CLN3-216ENST00000565316 UFM1P61960 85 aa15.05■□□□□ -0
CLN3-216ENST00000565316 SLC35A1P78382 337 aa15.05■□□□□ -0
CLN3-216ENST00000565316 HPCAP84074 193 aa15.05■□□□□ -0
CLN3-216ENST00000565316 STX3Q13277 289 aa15.05■□□□□ -0
CLN3-216ENST00000565316 SYPL1Q16563 259 aa15.05■□□□□ -0
CLN3-216ENST00000565316 OR7E24Q6IFN5 339 aa15.05■□□□□ -0
CLN3-216ENST00000565316 KLHL17Q6TDP4 642 aa15.05■□□□□ -0
CLN3-216ENST00000565316 LRRC74BQ6ZQY2 392 aa15.05■□□□□ -0
CLN3-216ENST00000565316 CXXC5Q7LFL8 322 aaKnown RBP15.05■□□□□ -0
CLN3-216ENST00000565316 OR52N5Q8NH56 324 aa15.05■□□□□ -0
CLN3-216ENST00000565316 DHRS9Q9BPW9 319 aa15.05■□□□□ -0
CLN3-216ENST00000565316 MTHFD2LQ9H903 347 aaPredicted RBP15.05■□□□□ -0
CLN3-216ENST00000565316 PNPOQ9NVS9 261 aa15.05■□□□□ -0
CLN3-216ENST00000565316 PRDM4Q9UKN5 801 aa15.05■□□□□ -0
CLN3-216ENST00000565316 TMED7Q9Y3B3 224 aa15.05■□□□□ -0
CLN3-216ENST00000565316 CR1P17927 2039 aa15.04■□□□□ -0
CLN3-216ENST00000565316 A0A096LNT2 108 aa15.04■□□□□ -0
CLN3-216ENST00000565316 TMEM72A0PK05 275 aa15.04■□□□□ -0
CLN3-216ENST00000565316 TP53P04637 393 aaPredicted RBP15.04■□□□□ -0
CLN3-216ENST00000565316 IL12AP29459 219 aa15.04■□□□□ -0
CLN3-216ENST00000565316 ZNF83P51522 516 aa15.04■□□□□ -0
CLN3-216ENST00000565316 FOXG1P55316 489 aaPredicted RBP15.04■□□□□ -0
CLN3-216ENST00000565316 IRX1P78414 480 aaPredicted RBP15.04■□□□□ -0
CLN3-216ENST00000565316 SLC17A1Q14916 467 aa15.04■□□□□ -0
CLN3-216ENST00000565316 C1QTNF12Q5T7M4 302 aa15.04■□□□□ -0
CLN3-216ENST00000565316 TRIML2Q8N7C3 387 aa15.04■□□□□ -0
CLN3-216ENST00000565316 WDR31Q8NA23 367 aa15.04■□□□□ -0
CLN3-216ENST00000565316 SPATA3Q8NHX4 192 aa15.04■□□□□ -0
CLN3-216ENST00000565316 DDIT4LQ96D03 193 aa15.04■□□□□ -0
CLN3-216ENST00000565316 DNAJA3Q96EY1 480 aa15.04■□□□□ -0
CLN3-216ENST00000565316 ADAM19Q9H013 955 aa15.04■□□□□ -0
CLN3-216ENST00000565316 CBLN4Q9NTU7 201 aa15.04■□□□□ -0
CLN3-216ENST00000565316 AIG1Q9NVV5 245 aa15.04■□□□□ -0
CLN3-216ENST00000565316 PARPBPQ9NWS1 579 aa15.04■□□□□ -0
CLN3-216ENST00000565316 DCTN4Q9UJW0 460 aa15.04■□□□□ -0
CLN3-216ENST00000565316 FLVCR1Q9Y5Y0 555 aa15.04■□□□□ -0
CLN3-216ENST00000565316 ALPK2Q86TB3 2170 aa15.04■□□□□ -0
CLN3-216ENST00000565316 CHD3Q12873 2000 aaKnown RBP15.04■□□□□ -0
CLN3-216ENST00000565316 SDHDO14521 159 aa15.03■□□□□ -0
CLN3-216ENST00000565316 PGRP06401 933 aa15.03■□□□□ -0
CLN3-216ENST00000565316 CCNA2P20248 432 aa15.03■□□□□ -0
CLN3-216ENST00000565316 PTNP21246 168 aa15.03■□□□□ -0
CLN3-216ENST00000565316 TACR3P29371 465 aa15.03■□□□□ -0
CLN3-216ENST00000565316 ANXA11P50995 505 aaKnown RBP15.03■□□□□ -0
CLN3-216ENST00000565316 NME5P56597 212 aa15.03■□□□□ -0
CLN3-216ENST00000565316 SPOCK1Q08629 439 aa15.03■□□□□ -0
CLN3-216ENST00000565316 LRRC74AQ0VAA2 488 aa15.03■□□□□ -0
CLN3-216ENST00000565316 BST1Q10588 318 aa15.03■□□□□ -0
CLN3-216ENST00000565316 EPS8Q12929 822 aa15.03■□□□□ -0
CLN3-216ENST00000565316 SLC22A25Q6T423 547 aa15.03■□□□□ -0
CLN3-216ENST00000565316 PAQR6Q6TCH4 344 aa15.03■□□□□ -0
CLN3-216ENST00000565316 B3GLCTQ6Y288 498 aa15.03■□□□□ -0
CLN3-216ENST00000565316 SPATA19Q7Z5L4 167 aa15.03■□□□□ -0
CLN3-216ENST00000565316 PIAS4Q8N2W9 510 aaPredicted RBP15.03■□□□□ -0
CLN3-216ENST00000565316 C1orf162Q8NEQ5 155 aaPredicted RBP15.03■□□□□ -0
CLN3-216ENST00000565316 OR10H5Q8NGA6 315 aa15.03■□□□□ -0
CLN3-216ENST00000565316 OR52E4Q8NGH9 312 aa15.03■□□□□ -0
CLN3-216ENST00000565316 ADAD1Q96M93 576 aaKnown RBP15.03■□□□□ -0
CLN3-216ENST00000565316 PANX1Q96RD7 426 aa15.03■□□□□ -0
CLN3-216ENST00000565316 NAA11Q9BSU3 229 aaPredicted RBP15.03■□□□□ -0
CLN3-216ENST00000565316 INPP5KQ9BT40 448 aa15.03■□□□□ -0
CLN3-216ENST00000565316 CACNG6Q9BXT2 260 aa15.03■□□□□ -0
CLN3-216ENST00000565316 SLC9A8Q9Y2E8 581 aa15.03■□□□□ -0
CLN3-216ENST00000565316 GPR45Q9Y5Y3 372 aa15.03■□□□□ -0
CLN3-216ENST00000565316 A0A1W2PR80 420 aa15.02■□□□□ -0
CLN3-216ENST00000565316 ZC3H12DA2A288 527 aaKnown RBP15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms