RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CDONQ4KMG0 1287 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 TMPRSS11FQ6ZWK6 438 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 RD3Q7Z3Z2 195 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 CDH24Q86UP0 819 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 RNF113BQ8IZP6 322 aaKnown RBP12.17□□□□□ -0.46
CLN3-210ENST00000563874 SNX33Q8WV41 574 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 ZNRF4Q8WWF5 429 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 GAL3ST3Q96A11 431 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SCP2D1Q9UJQ7 156 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 CAMK2AQ9UQM7 478 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 A0A1B0GVI7 797 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 AGR2O95994 175 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 GNRH1P01148 92 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 THBS1P07996 1170 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 CD53P19397 219 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 EDNRAP25101 427 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 AK4P27144 223 aaPredicted RBP12.17□□□□□ -0.46
CLN3-210ENST00000563874 LCN1P31025 176 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 BLVRAP53004 296 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 RPS11P62280 158 aaKnown RBP eCLIP12.17□□□□□ -0.46
CLN3-210ENST00000563874 CDK5R1Q15078 307 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 CST6Q15828 149 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 AANATQ16613 207 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 HACD4Q5VWC8 232 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 VITQ6UXI7 678 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 OR2T4Q8NH00 348 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 OR52I2Q8NH67 350 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SMIM4Q8WVI0 70 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SMIM19Q96E16 107 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 WDR89Q96FK6 387 aaPredicted RBP12.17□□□□□ -0.46
CLN3-210ENST00000563874 GPR174Q9BXC1 333 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 POT1Q9NUX5 634 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SPATA2Q9UM82 520 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 ADAM18Q9Y3Q7 739 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 M0R233 179 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 HIST1H1CP16403 213 aaKnown RBP12.17□□□□□ -0.46
CLN3-210ENST00000563874 GABRA3P34903 492 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SIRPAP78324 504 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 DEFB115Q30KQ5 88 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SLC22A10Q63ZE4 541 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SLC25A25Q6KCM7 469 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 TMEM65Q6PI78 240 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 SMARCD2Q92925 531 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 NOX4Q9NPH5 578 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 FLRT3Q9NZU0 649 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 ABRACLQ9P1F3 81 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 RPS6KB2Q9UBS0 482 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 DPP7Q9UHL4 492 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 MRPS2Q9Y399 296 aaKnown RBP12.17□□□□□ -0.46
CLN3-210ENST00000563874 AUP1Q9Y679 476 aa12.17□□□□□ -0.46
CLN3-210ENST00000563874 ANKRD61A6NGH8 418 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 FAM171A2A8MVW0 826 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 ARPC1BO15143 372 aaKnown RBP12.16□□□□□ -0.46
CLN3-210ENST00000563874 SLC31A1O15431 190 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 CTSVO60911 334 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 PTP4A3O75365 173 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 ZNF254O75437 659 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 GATBO75879 557 aaKnown RBP12.16□□□□□ -0.46
CLN3-210ENST00000563874 ALDOBP05062 364 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 SLC35G6P0C7Q6 338 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 TSFMP43897 325 aaKnown RBP12.16□□□□□ -0.46
CLN3-210ENST00000563874 CENPAP49450 140 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 SGCGQ13326 291 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 HSD17B12Q53GQ0 312 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 STPG1Q5TH74 334 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 FBXO42Q6P3S6 717 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 FGD2Q7Z6J4 655 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 PAQR7Q86WK9 346 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 TMEM52Q8NDY8 209 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 OR5T3Q8NGG3 340 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 TIMM29Q9BSF4 260 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 MCCC2Q9HCC0 563 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 HRASLSQ9HDD0 168 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 TBC1D29Q9UFV1 150 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 NUP50Q9UKX7 468 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 REV3LO60673 3130 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 ALPK2Q86TB3 2170 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 TRAV1-2A0A0B4J238 106 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 A0A1B0GWA3 101 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 FKTNO75072 461 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 ARL6IP5O75915 188 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 RGS11O94810 467 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 RAD52P43351 418 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 CCR9P51686 369 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 GBX2P52951 348 aaPredicted RBP12.16□□□□□ -0.46
CLN3-210ENST00000563874 RAB14P61106 215 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 FCRLAQ7L513 359 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 SPPL3Q8TCT6 385 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 SLC6A17Q9H1V8 727 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 TMEM27Q9HBJ8 222 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 FGF22Q9HCT0 170 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 NTMQ9P121 344 aa12.16□□□□□ -0.46
CLN3-210ENST00000563874 KIAA0100Q14667 2235 aaKnown RBP12.15□□□□□ -0.46
CLN3-210ENST00000563874 ARPC4-TTLL3A0A0A6YYG9 625 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 FGF17O60258 216 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 SELENOFO60613 162 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 CT62P0C5K7 136 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 ACTC1P68032 377 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 ACTA1P68133 377 aa12.15□□□□□ -0.46
CLN3-210ENST00000563874 MFSD13AQ14CX5 517 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms