RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 CLOCKO15516 846 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ZNF208O43345 1280 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 DNPH1O43598 174 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ANP32DO95626 131 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 CNOT4O95628 575 aaKnown RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 IGHV3-9P01782 118 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 GKN3PP0CG01 181 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ZCCHC18P0CG32 403 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 IMPDH2P12268 514 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 PAX1P15863 534 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 COX5AP20674 150 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 TACR3P29371 465 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ADSLP30566 484 aaPredicted RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 PTH2RP49190 550 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 H3F3AP84243 136 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 EPS8Q12929 822 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 STK11Q15831 433 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 AGBL2Q5U5Z8 902 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 FBXW9Q5XUX1 488 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ADAM5Q6NVV9 412 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 MSANTD1Q6ZTZ1 278 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 Q71RC1 249 aaPredicted RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 VRK2Q86Y07 508 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 MIER2Q8N344 545 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ZNF611Q8N823 705 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 OR52P1PQ8NH57 321 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 PIGXQ8TBF5 258 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 TMEM171Q8WVE6 324 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 GTF2H4Q92759 462 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 DDIT4LQ96D03 193 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ZHX1-C8orf76Q96EF9 292 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 AURKBQ96GD4 344 aaPredicted RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 POTEKPQ9BYX7 375 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ESRP2Q9H6T0 727 aaKnown RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 RMND5AQ9H871 391 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 NGBQ9NPG2 151 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ZNF701Q9NV72 531 aaPredicted RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 LAMP3Q9UQV4 416 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 NOSIPQ9Y314 301 aaKnown RBP9.09□□□□□ -0.95
CLK3-205ENST00000561673 RNF115Q9Y4L5 304 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 PCDHB14Q9Y5E9 798 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ZANQ9Y493 2812 aa9.09□□□□□ -0.95
CLK3-205ENST00000561673 ANK3Q12955 4377 aaKnown RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 DSPPQ9NZW4 1301 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 FAM234BA2RU67 622 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 TRIM64A6NGJ6 449 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 TRIM64BA6NI03 449 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 H7C1Q1 480 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 GPR171O14626 319 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 PGM3O95394 542 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 TGDSO95455 350 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 BCHEP06276 602 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 CD3EP07766 207 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 GGT1P19440 569 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ACAA2P42765 397 aaKnown RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 MAP2K6P52564 334 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 SLC16A1P53985 500 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 CRISP3P54108 245 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 DSTNP60981 165 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 SLC35A1P78382 337 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 BSPH1Q075Z2 132 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 PPA1Q15181 289 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ZNF672Q499Z4 452 aaPredicted RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 LIN52Q52LA3 116 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 RPS26P11Q5JNZ5 115 aaPredicted RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 TIMM23BQ5SRD1 257 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 C6orf10Q5SRN2 563 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 CLEC9AQ6UXN8 241 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ZNF836Q6ZNA1 936 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ZNF440Q8IYI8 595 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 UBE2J2Q8N2K1 259 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 CLIP4Q8N3C7 705 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ZNF433Q8N7K0 673 aaPredicted RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 NEUROG1Q92886 237 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 MUCL1Q96DR8 90 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 TMEM19Q96HH6 336 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 C7orf26Q96N11 449 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 PAIP1Q9H074 479 aaKnown RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 CXorf56Q9H5V9 222 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 SLCO1B3Q9NPD5 702 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 THUMPD1Q9NXG2 353 aaKnown RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 CALML5Q9NZT1 146 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ZNF443Q9Y2A4 671 aaPredicted RBP9.08□□□□□ -0.96
CLK3-205ENST00000561673 CHST2Q9Y4C5 530 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 ROS1P08922 2347 aa9.08□□□□□ -0.96
CLK3-205ENST00000561673 PRR14LQ5THK1 2151 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 RAI1Q7Z5J4 1906 aaPredicted RBP9.07□□□□□ -0.96
CLK3-205ENST00000561673 A0A0G2JPF8 293 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 OR5H1A6NKK0 313 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 HNRNPCL2B2RXH8 293 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 HNRNPCL3B7ZW38 293 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 CLIC1O00299 241 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 EIF1BO60739 113 aaKnown RBP9.07□□□□□ -0.96
CLK3-205ENST00000561673 HNRNPCL1O60812 293 aaKnown RBP9.07□□□□□ -0.96
CLK3-205ENST00000561673 TMCC2O75069 709 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 MRPL33O75394 65 aaKnown RBP9.07□□□□□ -0.96
CLK3-205ENST00000561673 SOD3P08294 240 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 HNRNPCL4P0DMR1 293 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 PRG2P13727 222 aa9.07□□□□□ -0.96
CLK3-205ENST00000561673 UQCRBP14927 111 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms