RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 MFSD8Q8NHS3 518 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 NEIL3Q8TAT5 605 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 TMEM255BQ8WV15 326 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CRELD1Q96HD1 420 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ADGRG7Q96K78 797 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CNTNAP3BQ96NU0 1288 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 RBM4BQ9BQ04 359 aaKnown RBP8.64□□□□□ -1.03
LIMA1-211ENST00000552338 ARHGAP9Q9BRR9 750 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 PTDSS2Q9BVG9 487 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 RBM4Q9BWF3 364 aaKnown RBP8.64□□□□□ -1.03
LIMA1-211ENST00000552338 CNTNAP3Q9BZ76 1288 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 RHCGQ9UBD6 479 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 DKKL1Q9UK85 242 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 TMCC3Q9ULS5 477 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 OAZ3Q9UMX2 235 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 VDAC3Q9Y277 283 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 TMEM5Q9Y2B1 443 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 MED31Q9Y3C7 131 aa8.64□□□□□ -1.03
LIMA1-211ENST00000552338 MAP1BP46821 2468 aaKnown RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 TRAV36DV7A0A075B6V5 113 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 LOC102725191A0A1B0GVB3 256 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 OR14I1A6ND48 311 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 GJE1A6NN92 205 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 AQP7O14520 342 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 PTP4A3O75365 173 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 PMS2P2O95744 297 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 BAG2O95816 211 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 GASTP01350 101 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 BGLAPP02818 100 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ASAH2BP0C7U1 165 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 PEPDP12955 493 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF708P17019 499 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF23P17027 643 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 GSTM3P21266 225 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 FPR3P25089 353 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 MAGEA5P43359 124 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 SLC9A3P48764 834 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 LHX2P50458 406 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 DAPP51397 102 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ALDH3A2P51648 485 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 H3F3AP84243 136 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ALDH6A1Q02252 535 aaKnown RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 PLGLB1Q02325 96 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 LTBQ06643 244 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ZP4Q12836 540 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 KLRB1Q12918 225 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 TSPAN31Q12999 210 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 FHL1Q13642 323 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF74Q16587 644 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 CTU2Q2VPK5 515 aaKnown RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 RFX4Q33E94 735 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 SYT14P1Q58G82 188 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ZBTB49Q6ZSB9 765 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 TMPPEQ6ZT21 453 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 TRILQ7L0X0 811 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 RRM2BQ7LG56 351 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 SLC46A3Q7Z3Q1 461 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ADPRHL1Q8NDY3 354 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 OR10G2Q8NGC3 310 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 OR52J3Q8NH60 311 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 GNPDA2Q8TDQ7 276 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 NRG4Q8WWG1 115 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 MIB2Q96AX9 1013 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 DDIT4LQ96D03 193 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 JSRP1Q96MG2 331 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 UCN2Q96RP3 112 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 FEVQ99581 238 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 SLC29A1Q99808 456 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 CIB1Q99828 191 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 SEMA6AQ9H2E6 1030 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 FKRPQ9H9S5 495 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 KRCC1Q9NPI7 259 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 PAQR5Q9NXK6 330 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 IL20Q9NYY1 176 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 PDP1Q9P0J1 537 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 TMEFF2Q9UIK5 374 aaPredicted RBP8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF337Q9Y3M9 751 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 U3KQV3 271 aa8.63□□□□□ -1.03
LIMA1-211ENST00000552338 ARHGAP21Q5T5U3 1957 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 TRGV5A0A0B4J1U4 118 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 ZC3H12DA2A288 527 aaKnown RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 DLGAP1O14490 977 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 SOCS2O14508 198 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 E2F6O75461 281 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 TP53P04637 393 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 HOXB1P14653 301 aaPredicted RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 ZNF24P17028 368 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 BMP7P18075 431 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 IL11P20809 199 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 PTDSS1P48651 473 aaKnown RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 TDGF1P3P51864 188 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 AGFG1P52594 562 aaKnown RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 CLDN15P56746 228 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 RPS4XP62701 263 aaKnown RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 LSM11P83369 360 aaKnown RBP eCLIP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 FOXK1P85037 733 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 CRYZQ08257 329 aaKnown RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 PPP1R8Q12972 351 aaKnown RBP8.62□□□□□ -1.03
LIMA1-211ENST00000552338 DAG1Q14118 895 aa8.62□□□□□ -1.03
LIMA1-211ENST00000552338 NADK2Q4G0N4 442 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms