RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 ZNF317Q96PQ6 595 aaPredicted RBP12.61□□□□□ -0.39
USP28-209ENST00000540925 KLHL28Q9NXS3 571 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 CORO2BQ9UQ03 480 aa12.61□□□□□ -0.39
USP28-209ENST00000540925 TMEM229AB2RXF0 380 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 FBP2O00757 339 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 FZD7O75084 574 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 NPIPB7O75200 414 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 UQCRBP14927 111 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 NTF4P34130 210 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 OR3A2P47893 321 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 KCNJ5P48544 419 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 PCBP3P57721 371 aaKnown RBP12.6□□□□□ -0.39
USP28-209ENST00000540925 RASGEF1BQ0VAM2 473 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 SELPLGQ14242 412 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 TMEM201Q5SNT2 666 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 WBP2NLQ6ICG8 309 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 DHRS4L2Q6PKH6 230 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 ZNF550Q7Z398 422 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 NET1Q7Z628 596 aaPredicted RBP12.6□□□□□ -0.39
USP28-209ENST00000540925 NINJ1Q92982 152 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 C3orf49Q96BT1 292 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 ZNF300Q96RE9 604 aaPredicted RBP12.6□□□□□ -0.39
USP28-209ENST00000540925 CGREF1Q99674 301 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 POTEKPQ9BYX7 375 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 C12orf49Q9H741 205 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 SAR1AQ9NR31 198 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 TMEM181Q9P2C4 612 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 ST6GALNAC2Q9UJ37 374 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 ZNF232Q9UNY5 417 aa12.6□□□□□ -0.39
USP28-209ENST00000540925 EVPLLA8MZ36 301 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 FXYD1O00168 92 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 ANGPT2O15123 496 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 ATP8B1O43520 1251 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 FRS3O43559 492 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 TPST1O60507 370 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 RAMP1O60894 148 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 TROVE2P10155 538 aaKnown RBP eCLIP12.59□□□□□ -0.39
USP28-209ENST00000540925 TFPIP10646 304 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 PPP3CBP16298 524 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 GZMMP51124 257 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 SCARB2Q14108 478 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 EXOC3L2Q2M3D2 409 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 COQ5Q5HYK3 327 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 C6orf89Q6UWU4 347 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 SPNS3Q6ZMD2 512 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 ATG4DQ86TL0 474 aaPredicted RBP12.59□□□□□ -0.39
USP28-209ENST00000540925 STK32CQ86UX6 486 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 DDIT4LQ96D03 193 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 MED18Q9BUE0 208 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 KLHL4Q9C0H6 718 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 CXXC4Q9H2H0 198 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 KAT8Q9H7Z6 458 aaKnown RBP12.59□□□□□ -0.39
USP28-209ENST00000540925 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.59□□□□□ -0.39
USP28-209ENST00000540925 GPR52Q9Y2T5 361 aa12.59□□□□□ -0.39
USP28-209ENST00000540925 UQCRHLA0A096LP55 91 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 LIPT2A6NK58 231 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 C5orf58C9J3I9 102 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 KLF4O43474 513 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 CCNA2P20248 432 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 HTR2AP28223 471 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 MDH1P40925 334 aaKnown RBP12.58□□□□□ -0.4
USP28-209ENST00000540925 P2RY4P51582 365 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 ARFIP2P53365 341 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 IST1P53990 364 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 MTPNP58546 118 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 KLF10Q13118 480 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 GLIPR1L2Q4G1C9 344 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 HSP90B2PQ58FF3 399 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 PRR14LQ5THK1 2151 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 ANKRD34AQ69YU3 496 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 SEZ6L2Q6UXD5 910 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 PAMR1Q6UXH9 720 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 Q6ZT83 130 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 CXorf67Q86X51 503 aaPredicted RBP12.58□□□□□ -0.4
USP28-209ENST00000540925 CCDC103Q8IW40 242 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 LSMEM1Q8N8F7 131 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 HIPK4Q8NE63 616 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 PIGXQ8TBF5 258 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 MBD6Q96DN6 1003 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 ARMC7Q9H6L4 198 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 MRGBPQ9NV56 204 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 ZNF226Q9NYT6 803 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 C6orf203Q9P0P8 240 aaPredicted RBP12.58□□□□□ -0.4
USP28-209ENST00000540925 KLHL14Q9P2G3 628 aa12.58□□□□□ -0.4
USP28-209ENST00000540925 FTCDNL1E5RQL4 147 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 CASKO14936 926 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 EIF1BO60739 113 aaKnown RBP12.57□□□□□ -0.4
USP28-209ENST00000540925 MFN2O95140 757 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 ATE1O95260 518 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 CNOT4O95628 575 aaKnown RBP12.57□□□□□ -0.4
USP28-209ENST00000540925 VIMP08670 466 aaKnown RBP12.57□□□□□ -0.4
USP28-209ENST00000540925 COX5AP20674 150 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 SLC6A2P23975 617 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 CXCR1P25024 350 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 SLC35A1P78382 337 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 HOXC5Q00444 222 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 EGR4Q05215 589 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 DMTNQ08495 405 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 RBBP4Q09028 425 aa12.57□□□□□ -0.4
USP28-209ENST00000540925 SLC17A1Q14916 467 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms