RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 CAMK2AQ9UQM7 478 aa6.09□□□□□ -1.43
USP28-202ENST00000535607 KCNK7Q9Y2U2 307 aa6.09□□□□□ -1.43
USP28-202ENST00000535607 NOSIPQ9Y314 301 aaKnown RBP6.09□□□□□ -1.43
USP28-202ENST00000535607 PCM1Q15154 2024 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 A0A1B0GTQ1 180 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 CIB4A0PJX0 185 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ZNF98A6NK75 572 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 OR5K4A6NMS3 321 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 KDM4EB2RXH2 506 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 WWP2O00308 870 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FOXE1O00358 373 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 ACSL4O60488 711 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 CREBL2O60519 120 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 SDC3O75056 442 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 SOCS5O75159 536 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ARL6IP5O75915 188 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FGF19O95750 216 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 TFP02787 698 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 OPN1SWP03999 348 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 IL3P08700 152 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FGF2P09038 288 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 OR4Q2P0C623 313 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ICAM2P13598 275 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ELAVL4P26378 380 aaKnown RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 S100A11P31949 105 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 MNDAP41218 407 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 SLC1A3P43003 542 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 UCP3P55916 312 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 MAZP56270 477 aaKnown RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 CTBP2P56545 445 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 RHOAP61586 193 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 RPS16P62249 146 aaKnown RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 CDK5Q00535 292 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FGL1Q08830 312 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 IHHQ14623 411 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 GANABQ14697 944 aaKnown RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 P2RY14Q15391 338 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 CSRP2Q16527 193 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 MAPK14Q16539 360 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 PTCHD3Q3KNS1 767 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 TCTE1Q5JU00 501 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ENTPD8Q5MY95 495 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ELFN2Q5R3F8 820 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 LIN54Q6MZP7 749 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 RGS7BPQ6MZT1 257 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 MED27Q6P2C8 311 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 PGBD2Q6P3X8 592 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FAM151BQ6UXP7 276 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FAM83HQ6ZRV2 1179 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 RAB11FIP2Q7L804 512 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 YAF2Q8IY57 180 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 KLHDC8AQ8IYD2 350 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 SAMD12Q8N8I0 201 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 OR6C4Q8NGE1 309 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FANK1Q8TC84 345 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 CXorf40AQ8TE69 158 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 KAT2AQ92830 837 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 MAL2Q969L2 176 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ARL5BQ96KC2 179 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 LINC00052Q96N35 136 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FOPNLQ96NB1 174 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 SFXN2Q96NB2 322 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 WWC2-AS2Q96NR7 200 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 TCEAL7Q9BRU2 100 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 WRAP53Q9BUR4 548 aaKnown RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 TMED9Q9BVK6 235 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 FAIM2Q9BWQ8 316 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 MS4A7Q9GZW8 240 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 SAV1Q9H4B6 383 aaPredicted RBP6.08□□□□□ -1.44
USP28-202ENST00000535607 ANKRD19PQ9H560 264 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 WDR26Q9H7D7 661 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 NMUR1Q9HB89 426 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 MYNNQ9NPC7 610 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 TMEM30AQ9NV96 361 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 COQ3Q9NZJ6 369 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 RPS6KB2Q9UBS0 482 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 COPS3Q9UNS2 423 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 PLCL2Q9UPR0 1127 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 YIPF1Q9Y548 306 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 INSL5Q9Y5Q6 135 aa6.08□□□□□ -1.44
USP28-202ENST00000535607 ZNF106Q9H2Y7 1883 aaKnown RBP6.07□□□□□ -1.44
USP28-202ENST00000535607 PDE4DIPQ5VU43 2346 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 TRBV4-1A0A0J9YWV2 114 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 MBD3L4A6NDZ8 208 aaPredicted RBP6.07□□□□□ -1.44
USP28-202ENST00000535607 MBD3L3A6NE82 208 aaPredicted RBP6.07□□□□□ -1.44
USP28-202ENST00000535607 A8MUA0 341 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 HEPACAM2A8MVW5 462 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 F8W036 122 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 PYCARD-AS1I3L0S3 204 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 M0R129 80 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 PRRG1O14668 218 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 MID1O15344 667 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 RNF13O43567 381 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 RAD1O60671 282 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 KCNJ13O60928 360 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 FZD7O75084 574 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 KHDRBS3O75525 346 aaKnown RBP6.07□□□□□ -1.44
USP28-202ENST00000535607 VNN2O95498 520 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 MPC2O95563 127 aa6.07□□□□□ -1.44
USP28-202ENST00000535607 CATP04040 527 aaKnown RBP6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms